1:th5:rdep running "influx_s.py --install_rdep" ...
2:th6:e_coli running "influx_s.py cases/e_coli" ...
3:th1:e_coli_i running "influx_i.py cases/e_coli_i" ...
7:th3:e_coli.mc4 running "influx_s.py --sens mc=4 --seed 7 --np 4 --wkvh cases/e_coli_3_" ...
4:th0:e_coli_i_emu running "influx_i.py --emu cases/e_coli_i_1_" ...
5:th4:e_coli.noopt running "influx_s.py --noopt cases/e_coli_1_" ...
6:th7:e_coli.emu running "influx_s.py --emu cases/e_coli_2_" ...
8:th2:e_coli.emu.mc4 running "influx_s.py --emu --sens mc=4 --seed 7 --np 4 --wkvh cases/e_coli_4_" ...
done 1:th5:rdep (3.95 s)
9:th5:e_coli_i.mc4 running "influx_i.py --sens mc=4 --seed 777 --np 4 --wkvh cases/e_coli_i_2_" ...
done 6:th7:e_coli.emu (8.27 s)
10:th7:e_coli_i.mc4.np1 running "influx_i.py --sens mc=4 --seed 7 --np 1 --wkvh cases/e_coli_i_3_" ...
done 5:th4:e_coli.noopt (8.61 s)
11:th4:e_coli_i.emu.mc4 running "influx_i.py --sens mc=4 --emu --seed 7 --np 4 --wkvh cases/e_coli_i_4_" ...
done 2:th6:e_coli (8.62 s)
12:th6:e_coli_NA running "influx_s.py cases/e_coli_NA" ...
done 8:th2:e_coli.emu.mc4 (15.85 s)
13:th2:e_coli_growth running "influx_s.py cases/e_coli_growth" ...
done 7:th3:e_coli.mc4 (15.94 s)
14:th3:e_coli_BM_eqs running "influx_s.py cases/Modele_GC-AAprot_BM_pmi_SSOtest" ...
done 12:th6:e_coli_NA (10.35 s)
15:th6:utf8_BOM running "ftbl2netan.py cases/e_coli_growth_utf8 > cases/e_coli_growth_utf8.netan" ...
done 15:th6:utf8_BOM (1.62 s)
16:th6:constr_ineq_clownr running "influx_s.py cases/explicit_ineq_constr_flux" ...
done 4:th0:e_coli_i_emu (25.29 s)
17:th0:spe_char running "influx_s.py cases/spe_char_flux" ...
done 13:th2:e_coli_growth (10.17 s)
18:th2:long_reac running "influx_s.py --fullsys cases/long_reac" ...
done 3:th1:e_coli_i (26.36 s)
19:th1:e_coli_prl running "influx_s.py cases/e_coli_glc1-6n" ...
done 16:th6:constr_ineq_clownr (7.55 s)
20:th6:e_coli_i_prl running "influx_i.py cases/e_coli_GX_prl" ...
done 17:th0:spe_char (7.34 s)
21:th0:xml_ecoli running "ftbl2metxml.py cases/e_coli" ...
done 18:th2:long_reac (7.40 s)
22:th2:h_sapiens_pf running "influx_s.py --wkvh cases/h_sapiens" ...
done 21:th0:xml_ecoli (2.37 s)
23:th0:dzwf_nbc0 running "influx_s.py cases/Dzwf_1" ...
done 14:th3:e_coli_BM_eqs (33.10 s)
24:th3:prl_exp_mc running "influx_s.py --sens mc=4 cases/e_coli_1-Glc_exact" ...
done 24:th3:prl_exp_mc (27.72 s)
25:th3:utf16 running "ftbl2netan.py cases/UTF16.ftbl" ...
done 23:th0:dzwf_nbc0 (43.23 s)
26:th0:utf32 running "ftbl2netan.py cases/UTF32.ftbl" ...
done 25:th3:utf16 (3.12 s)
27:th3:mc_prl_weighted_pools running "influx_s.py --wkvh cases/mc_prl_weighted_pools.ftbl" ...
done 26:th0:utf32 (2.75 s)
28:th0:sln_use running "influx_s.py --sln cases/model_Man-Bio12" ...
done 9:th5:e_coli_i.mc4 (84.27 s)
29:th5:dim_fixed running "influx_i.py cases/methanol_v1.ftbl" ...
done 19:th1:e_coli_prl (63.51 s)
30:th1:na_grad running "influx_i.py --wkvh cases/methanol_v2.2_bio1" ...
done 22:th2:h_sapiens_pf (60.91 s)
31:th2:err.too_many_dep_fluxes running "influx_s.py cases/branching-2014-09-01" ...
done 31:th2:err.too_many_dep_fluxes (2.90 s)
32:th2:err.too_many_free_fluxes.1 running "influx_s.py cases/branching_MS" ...
done 32:th2:err.too_many_free_fluxes.1 (2.62 s)
33:th2:err.too_many_free_fluxes.2 running "influx_s.py cases/err_extra_ff-2014-04-02" ...
done 33:th2:err.too_many_free_fluxes.2 (8.76 s)
34:th2:err.no_dep_fluxes running "influx_s.py cases/no_dep_fluxes" ...
done 34:th2:err.no_dep_fluxes (2.29 s)
35:th2:err.lack_fluxval running "influx_s.py cases/err_lack_fluxval" ...
done 35:th2:err.lack_fluxval (3.33 s)
36:th2:err.depflux_zero-2014-04-02 running "influx_s.py cases/err_depflux_zero-2014-04-02" ...
done 28:th0:sln_use (35.51 s)
37:th0:err.lindep_rows-2014-04-02 running "influx_s.py cases/err_lindep_rows-2014-04-02" ...
done 37:th0:err.lindep_rows-2014-04-02 (7.02 s)
38:th0:err.jac_rank_deficient running "influx_s.py cases/err_jac_rank_def" ...
done 10:th7:e_coli_i.mc4.np1 (119.59 s)
39:th7:err.singular_stoech running "influx_s.py cases/err_singular_stoech" ...
done 39:th7:err.singular_stoech (5.18 s)
40:th7:err.dev_zero running "influx_s.py cases/err_dev_zero" ...
done 36:th2:err.depflux_zero-2014-04-02 (20.14 s)
41:th2:err.rep_let running "influx_s.py cases/rep_let" ...
done 40:th7:err.dev_zero (1.95 s)
42:th7:err.bad_map running "influx_s.py cases/bad_map" ...
done 41:th2:err.rep_let (1.93 s)
43:th2:err.tr_miss running "influx_s.py cases/err_trans_missing" ...
done 42:th7:err.bad_map (2.32 s)
44:th7:input1C running "influx_i.py cases/input1C_i.ftbl" ...
done 29:th5:dim_fixed (50.11 s)
45:th5:ffguess running "influx_i.py cases/ffguess_i.ftbl" ...
done 38:th0:err.jac_rank_deficient (14.97 s)
46:th0:exe running "influx_s --version" ...
done 43:th2:err.tr_miss (2.45 s)
47:th2:exei running "influx_i --version" ...
done 46:th0:exe (1.55 s)
48:th0:ff2ftbl running "ff2ftbl cases/e_coli > cases/e_coli_res/tmp/e_coli_ff.ftbl" ...
done 47:th2:exei (1.33 s)
49:th2:Rreprod running "influx_s --nocalc cases/e_coli && mv -f cases/e_coli_res/tmp/e_coli.R cases/e_coli_res/tmp/e_coli.R1 && influx_s --nocalc cases/e_coli && [ "$(tail -n +5 cases/e_coli_res/tmp/e_coli.R | md5sum)" == "$(tail -n +5 cases/e_coli_res/tmp/e_coli.R1 | md5sum)" ] && rm -f cases/e_coli_res/tmp/e_coli.R1" ...
done 48:th0:ff2ftbl (0.19 s)
50:th0:pso running "influx_s.py cases/e_coli_pso.ftbl" ...
done 49:th2:Rreprod (4.74 s)
51:th2:ffg running "influx_s.py --seed 777 --clownr 1.e-3 cases/ffguess_eq.ftbl" ...
done 45:th5:ffguess (22.74 s)
52:th5:weird_i running "influx_i.py cases/e_coli2_i.ftbl" ...
done 44:th7:input1C (25.21 s)
53:th7:mumps running "influx_s.py cases/mumps_mem.ftbl" ...
done 50:th0:pso (28.63 s)
54:th0:sbml_compart running "ftbl2metxml.py --cstart "_[" --cend="]" cases/sbml_compart.ftbl" ...
done 54:th0:sbml_compart (7.13 s)
55:th0:linspl running "influx_i --pref cases/ex_i_2box_lin" ...
done 52:th5:weird_i (15.59 s)
56:th5:ftbl2mtf running "ftbl2mtf cases/e_coli -o cases/e_mtf" ...
done 56:th5:ftbl2mtf (4.52 s)
57:th5:ftbl2mtfi running "ftbl2mtf -i cases/e_coli_i -o cases/e_mtf_i" ...
done 51:th2:ffg (36.35 s)
58:th2:mtf2ftbl running "txt2ftbl --prefix cases/e_mtf" ...
done 57:th5:ftbl2mtfi (2.94 s)
59:th5:err_sub_net running "influx_i --prefix cases/Coli_core --emu --ffguess --noscale --ln" ...
done 58:th2:mtf2ftbl (3.74 s)
60:th2:deadend running "rm -f cases/ex_deadend.netan && ftbl2netan cases/ex_deadend > cases/ex_deadend.netan" ...
done 59:th5:err_sub_net (3.35 s)
61:th5:ftbl2kvh running "ftbl2kvh --prefix cases/e_mtf > cases/e_mtf.kvh" ...
done 60:th2:deadend (3.54 s)
62:th2:ftbl2netan running "ftbl2netan --prefix cases/e_mtf > cases/e_mtf.netan" ...
done 61:th5:ftbl2kvh (4.64 s)
63:th5:ftbl2metxml running "ftbl2metxml --prefix cases/e_mtf > cases/e_mtf.xml" ...
done 62:th2:ftbl2netan (4.91 s)
64:th2:ftbl2xgmml running "ftbl2xgmml --prefix cases/e_mtf > cases/e_mtf.xgmml" ...
done 55:th0:linspl (20.47 s)
65:th0:ftbl2cumoAb running "ftbl2cumoAb --prefix cases/e_mtf > cases/e_mtf.sys" ...
done 63:th5:ftbl2metxml (4.49 s)
66:th5:sbml running "influx_i --prefix cases/mtf/sbml1" ...
done 64:th2:ftbl2xgmml (3.26 s)
67:th2:sbmlfmap running "ftbl2cumoAb --prefix cases/mtf/sbml1 --flux cases/mtf/Coli_core_bs.tsv" ...
done 65:th0:ftbl2cumoAb (5.17 s)
68:th0:mtfdef running "txt2ftbl cases/mtf/sbml1" ...
done 67:th2:sbmlfmap (6.71 s)
69:th2:tmono running "txt2ftbl --prefix cases/mtf/tmono --inst" ...
done 68:th0:mtfdef (3.20 s)
70:th0:multi running "influx_s cases/e_coli cases/e_coli_growth" ...
done 11:th4:e_coli_i.emu.mc4 (197.69 s)
71:th4:mv_ikin running "influx_i --pref cases/e_mtf_i" ...
done 69:th2:tmono (4.99 s)
72:th2:empty.mflux running "influx_i --pref cases/mtf/empty_opt --nocalc" ...
done 20:th6:e_coli_i_prl (184.79 s)
73:th6:outdir running "influx_s --nocalc cases/e_coli_6_ -o cases/tmp" ...
done 70:th0:multi (10.02 s)
74:th0:outdir running "influx_s --nocalc cases/e_coli_7_" ...
done 73:th6:outdir (2.30 s)
75:th6:move_prl running "influx_s.py --nocalc --prefix cases/mtf/e_coli_glc1-6n" ...
done 74:th0:outdir (1.83 s)
76:th0:miss_lab running "influx_s.py --pref cases/mtf/missing_lab --eprl cases/mtf/missing_lab_ple" ...
done 53:th7:mumps (54.23 s)
77:th7:move_r running "influx_s.py --pref cases/mtf/design_test_1" ...
done 75:th6:move_prl (3.54 s)
78:th6:third running "python3 third.py" ...
done 77:th7:move_r (2.88 s)
79:th7:fullsys_i running "influx_i.py --fullsys cases/input1C_i.ftbl" ...
done 78:th6:third (1.61 s)
80:th6:move_prof running "influx_s.py cases/e_coli --noopt --prof" ...
done 72:th2:empty.mflux (13.57 s)
81:th2:fullemudyn running "influx_i.py --fullsys --noopt --pref cases/mtf/MIN_M.xu5p..D.c" ...
done 66:th5:sbml (26.77 s)
82:th5:erremptydat running "influx_i.py --pref cases/mtf/XU5P/MIN_M.xu5p..D.c" ...
done 27:th3:mc_prl_weighted_pools (146.01 s)
done 82:th5:erremptydat (3.26 s)
done 80:th6:move_prof (9.07 s)
done 79:th7:fullsys_i (10.15 s)
done 76:th0:miss_lab (15.65 s)
done 81:th2:fullemudyn (12.30 s)
done 71:th4:mv_ikin (28.23 s)
done 30:th1:na_grad (198.23 s)
---
In total, run 82 test of which 0 failed. (288.20 s)
