1:th0:rdep running "influx_s.py --install_rdep" ...
3:th2:e_coli_i running "influx_i.py cases/e_coli_i" ...
8:th7:e_coli.emu.mc4 running "influx_s.py --emu --sens mc=4 --seed 7 --np 4 cases/e_coli_4_" ...
6:th5:e_coli.emu running "influx_s.py --emu cases/e_coli_2_" ...
5:th4:e_coli.noopt running "influx_s.py --noopt cases/e_coli_1_" ...
4:th3:e_coli_i_emu running "influx_i.py --emu cases/e_coli_i_1_" ...
7:th6:e_coli.mc4 running "influx_s.py --sens mc=4 --seed 7 --np 4 cases/e_coli_3_" ...
2:th1:e_coli running "influx_s.py cases/e_coli" ...
done 2:th1:e_coli (6.46 s)
9:th1:e_coli_i.mc4 running "influx_i.py --sens mc=4 --seed 777 --np 4 cases/e_coli_i_2_" ...
done 5:th4:e_coli.noopt (6.67 s)
10:th4:e_coli_i.mc4.np1 running "influx_i.py --sens mc=4 --seed 7 --np 1 cases/e_coli_i_3_" ...
done 6:th5:e_coli.emu (7.05 s)
11:th5:e_coli_i.emu.mc4 running "influx_i.py --sens mc=4 --emu --seed 7 --np 4 cases/e_coli_i_4_" ...
done 10:th4:e_coli_i.mc4.np1 (1.99 s)
12:th4:e_coli_NA running "influx_s.py cases/e_coli_NA" ...
done 9:th1:e_coli_i.mc4 (2.34 s)
13:th1:e_coli_growth running "influx_s.py cases/e_coli_growth" ...
done 11:th5:e_coli_i.emu.mc4 (2.43 s)
14:th5:e_coli_BM_eqs running "influx_s.py cases/Modele_GC-AAprot_BM_pmi_SSOtest" ...
done 8:th7:e_coli.emu.mc4 (11.53 s)
15:th7:utf8_BOM running "ftbl2netan.py cases/e_coli_growth_utf8 > cases/e_coli_growth_utf8.netan" ...
done 7:th6:e_coli.mc4 (11.80 s)
16:th6:constr_ineq_clownr running "influx_s.py cases/explicit_ineq_constr_flux" ...
done 12:th4:e_coli_NA (3.62 s)
17:th4:spe_char running "influx_s.py cases/spe_char_flux" ...
done 13:th1:e_coli_growth (3.66 s)
18:th1:long_reac running "influx_s.py --fullsys cases/long_reac" ...
done 14:th5:e_coli_BM_eqs (3.21 s)
19:th5:e_coli_prl running "influx_s.py cases/e_coli_glc1-6n" ...
done 15:th7:utf8_BOM (1.87 s)
20:th7:e_coli_i_prl running "influx_i.py cases/e_coli_GX_prl" ...
done 16:th6:constr_ineq_clownr (2.20 s)
21:th6:xml_ecoli running "ftbl2metxml.py cases/e_coli" ...
done 17:th4:spe_char (1.94 s)
22:th4:h_sapiens_pf running "influx_s.py cases/h_sapiens" ...
done 21:th6:xml_ecoli (1.89 s)
23:th6:dzwf_nbc0 running "influx_s.py cases/Dzwf_1" ...
done 18:th1:long_reac (5.29 s)
24:th1:prl_exp_mc running "influx_s.py --sens mc=4 cases/e_coli_1-Glc_exact" ...
done 1:th0:rdep (21.71 s)
25:th0:utf16 running "ftbl2netan.py cases/UTF16.ftbl" ...
done 25:th0:utf16 (2.24 s)
26:th0:utf32 running "ftbl2netan.py cases/UTF32.ftbl" ...
done 26:th0:utf32 (1.93 s)
27:th0:mc_prl_weighted_pools running "influx_s.py cases/mc_prl_weighted_pools.ftbl" ...
done 4:th3:e_coli_i_emu (30.96 s)
28:th3:sln_use running "influx_s.py --sln cases/model_Man-Bio12" ...
done 24:th1:prl_exp_mc (13.64 s)
29:th1:dim_fixed running "influx_i.py cases/methanol_v1.ftbl" ...
done 3:th2:e_coli_i (31.84 s)
30:th2:na_grad running "influx_i.py cases/methanol_v2.2_bio1" ...
done 23:th6:dzwf_nbc0 (17.48 s)
31:th6:err.too_many_dep_fluxes running "influx_s.py cases/branching-2014-09-01" ...
done 31:th6:err.too_many_dep_fluxes (3.55 s)
32:th6:err.too_many_free_fluxes.1 running "influx_s.py cases/branching_MS" ...
done 32:th6:err.too_many_free_fluxes.1 (2.28 s)
33:th6:err.too_many_free_fluxes.2 running "influx_s.py cases/err_extra_ff-2014-04-02" ...
done 22:th4:h_sapiens_pf (33.76 s)
34:th4:err.no_dep_fluxes running "influx_s.py cases/no_dep_fluxes" ...
done 34:th4:err.no_dep_fluxes (2.08 s)
35:th4:err.lack_fluxval running "influx_s.py cases/err_lack_fluxval" ...
done 33:th6:err.too_many_free_fluxes.2 (11.50 s)
36:th6:err.depflux_zero-2014-04-02 running "influx_s.py cases/err_depflux_zero-2014-04-02" ...
done 35:th4:err.lack_fluxval (1.51 s)
37:th4:err.lindep_rows-2014-04-02 running "influx_s.py cases/err_lindep_rows-2014-04-02" ...
done 28:th3:sln_use (20.81 s)
38:th3:err.jac_rank_deficient running "influx_s.py cases/err_jac_rank_def" ...
done 38:th3:err.jac_rank_deficient (7.08 s)
39:th3:err.singular_stoech running "influx_s.py cases/err_singular_stoech" ...
done 36:th6:err.depflux_zero-2014-04-02 (9.26 s)
40:th6:err.dev_zero running "influx_s.py cases/err_dev_zero" ...
done 37:th4:err.lindep_rows-2014-04-02 (10.93 s)
41:th4:err.rep_let running "influx_s.py cases/rep_let" ...
done 40:th6:err.dev_zero (3.83 s)
42:th6:err.bad_map running "influx_s.py cases/bad_map" ...
done 29:th1:dim_fixed (32.81 s)
43:th1:err.tr_miss running "influx_s.py cases/err_trans_missing" ...
done 41:th4:err.rep_let (1.79 s)
44:th4:input1C running "influx_i.py cases/input1C_i.ftbl" ...
done 42:th6:err.bad_map (1.73 s)
45:th6:ffguess running "influx_i.py cases/ffguess_i.ftbl" ...
done 43:th1:err.tr_miss (1.63 s)
46:th1:exe running "influx_s --version" ...
done 39:th3:err.singular_stoech (7.03 s)
47:th3:exei running "influx_i --version" ...
done 46:th1:exe (1.49 s)
48:th1:ff2ftbl running "ff2ftbl cases/e_coli > cases/e_coli_res/tmp/e_coli_ff.ftbl" ...
done 47:th3:exei (1.59 s)
49:th3:Rreprod running "influx_s --nocalc cases/e_coli && mv -f cases/e_coli_res/tmp/e_coli.R cases/e_coli_res/tmp/e_coli.R1 && influx_s --nocalc cases/e_coli && [ "$(tail -n +5 cases/e_coli_res/tmp/e_coli.R | md5sum)" == "$(tail -n +5 cases/e_coli_res/tmp/e_coli.R1 | md5sum)" ] && rm -f cases/e_coli_res/tmp/e_coli.R1" ...
done 48:th1:ff2ftbl (0.41 s)
50:th1:pso running "influx_s.py cases/e_coli_pso.ftbl" ...
done 44:th4:input1C (8.87 s)
51:th4:ffg running "influx_s.py --seed 777 --clownr 1.e-3 cases/ffguess_eq.ftbl" ...
done 45:th6:ffguess (8.38 s)
52:th6:weird_i running "influx_i.py cases/e_coli2_i.ftbl" ...
done 27:th0:mc_prl_weighted_pools (49.08 s)
53:th0:mumps running "influx_s.py cases/mumps_mem.ftbl" ...
done 19:th5:e_coli_prl (64.15 s)
54:th5:sbml_compart running "ftbl2metxml.py --cstart "_[" --cend="]" cases/sbml_compart.ftbl" ...
done 50:th1:pso (9.20 s)
55:th1:linspl running "influx_i --pref cases/ex_i_2box_lin" ...
done 52:th6:weird_i (3.32 s)
56:th6:ftbl2mtf running "ftbl2mtf cases/e_coli -o cases/e_mtf" ...
done 54:th5:sbml_compart (1.68 s)
57:th5:ftbl2mtfi running "ftbl2mtf -i cases/e_coli_i -o cases/e_mtf_i" ...
done 56:th6:ftbl2mtf (1.58 s)
58:th6:mtf2ftbl running "txt2ftbl --prefix cases/e_mtf" ...
done 57:th5:ftbl2mtfi (1.40 s)
59:th5:err_sub_net running "influx_i --prefix cases/Coli_core --emu --ffguess --noscale --ln" ...
done 58:th6:mtf2ftbl (1.54 s)
60:th6:deadend running "rm -f cases/ex_deadend.netan && ftbl2netan cases/ex_deadend > cases/ex_deadend.netan" ...
done 59:th5:err_sub_net (1.48 s)
61:th5:ftbl2kvh running "ftbl2kvh --prefix cases/e_mtf > cases/e_mtf.kvh" ...
done 49:th3:Rreprod (14.28 s)
62:th3:ftbl2netan running "ftbl2netan --prefix cases/e_mtf > cases/e_mtf.netan" ...
done 60:th6:deadend (1.42 s)
63:th6:ftbl2metxml running "ftbl2metxml --prefix cases/e_mtf > cases/e_mtf.xml" ...
done 53:th0:mumps (7.65 s)
64:th0:ftbl2xgmml running "ftbl2xgmml --prefix cases/e_mtf > cases/e_mtf.xgmml" ...
done 55:th1:linspl (5.73 s)
65:th1:ftbl2cumoAb running "ftbl2cumoAb --prefix cases/e_mtf > cases/e_mtf.sys" ...
done 61:th5:ftbl2kvh (1.67 s)
66:th5:sbml running "influx_i --prefix cases/mtf/sbml1" ...
done 51:th4:ffg (9.91 s)
67:th4:sbmlfmap running "ftbl2cumoAb --prefix cases/mtf/sbml1 --flux cases/mtf/Coli_core_bs.tsv" ...
done 62:th3:ftbl2netan (2.13 s)
68:th3:mtfdef running "txt2ftbl cases/mtf/sbml1" ...
done 63:th6:ftbl2metxml (2.42 s)
69:th6:tmono running "txt2ftbl --prefix cases/mtf/tmono --inst" ...
done 64:th0:ftbl2xgmml (2.13 s)
70:th0:multi running "influx_s cases/e_coli cases/e_coli_growth" ...
done 68:th3:mtfdef (1.19 s)
71:th3:mv_ikin running "influx_i --pref cases/e_mtf_i" ...
done 67:th4:sbmlfmap (4.40 s)
done 65:th1:ftbl2cumoAb (5.11 s)
done 69:th6:tmono (3.88 s)
done 70:th0:multi (7.33 s)
done 66:th5:sbml (19.25 s)
done 71:th3:mv_ikin (27.73 s)
done 20:th7:e_coli_i_prl (120.30 s)
done 30:th2:na_grad (152.22 s)
---
In total, run 71 tests of which 8 failed (e_coli_i.mc4, e_coli_growth, e_coli_i.mc4.np1, e_coli_NA, spe_char, e_coli_i.emu.mc4, e_coli_BM_eqs, constr_ineq_clownr [9,13,10,12,17,11,14,16]). (184.38 s)
