@article{Maynard2020,
  doi       = {10.1016/j.cell.2020.07.017},
  url       = {https://doi.org/10.1016/j.cell.2020.07.017},
  year      = {2020},
  month     = sep,
  publisher = {Elsevier {BV}},
  volume    = {182},
  number    = {5},
  pages     = {1232--1251.e22},
  author    = {Ashley Maynard and Caroline E. McCoach and Julia K. Rotow and Lincoln Harris and Franziska Haderk and D. Lucas Kerr and Elizabeth A. Yu and Erin L. Schenk and Weilun Tan and Alexander Zee and Michelle Tan and Philippe Gui and Tasha Lea and Wei Wu and Anatoly Urisman and Kirk Jones and Rene Sit and Pallav K. Kolli and Eric Seeley and Yaron Gesthalter and Daniel D. Le and Kevin A. Yamauchi and David M. Naeger and Sourav Bandyopadhyay and Khyati Shah and Lauren Cech and Nicholas J. Thomas and Anshal Gupta and Mayra Gonzalez and Hien Do and Lisa Tan and Bianca Bacaltos and Rafael Gomez-Sjoberg and Matthew Gubens and Thierry Jahan and Johannes R. Kratz and David Jablons and Norma Neff and Robert C. Doebele and Jonathan Weissman and Collin M. Blakely and Spyros Darmanis and Trever G. Bivona},
  title     = {Therapy-Induced Evolution of Human Lung Cancer Revealed by Single-Cell {RNA} Sequencing},
  journal   = {Cell}
}

@article{Tirosh2016,
  author  = {Tirosh, I.  and Venteicher, A. S.  and Hebert, C.  and Escalante, L. E.  and Patel, A. P.  and Yizhak, K.  and Fisher, J. M.  and Rodman, C.  and Mount, C.  and Filbin, M. G.  and Neftel, C.  and Desai, N.  and Nyman, J.  and Izar, B.  and Luo, C. C.  and Francis, J. M.  and Patel, A. A.  and Onozato, M. L.  and Riggi, N.  and Livak, K. J.  and Gennert, D.  and Satija, R.  and Nahed, B. V.  and Curry, W. T.  and Martuza, R. L.  and Mylvaganam, R.  and Iafrate, A. J.  and Frosch, M. P.  and Golub, T. R.  and Rivera, M. N.  and Getz, G.  and Rozenblatt-Rosen, O.  and Cahill, D. P.  and Monje, M.  and Bernstein, B. E.  and Louis, D. N.  and Regev, A.  and Suvà, M. L. },
  title   = {{{S}ingle-cell {R}{N}{A}-seq supports a developmental hierarchy in human oligodendroglioma}},
  journal = {Nature},
  year    = {2016},
  volume  = {539},
  number  = {7628},
  pages   = {309--313},
  month   = {11}
}

@article{Gao2021,
  doi       = {10.1038/s41587-020-00795-2},
  url       = {https://doi.org/10.1038/s41587-020-00795-2},
  year      = {2021},
  month     = jan,
  publisher = {Nature},
  volume    = {39},
  pages     = {599--608},
  author    = {Gao R.  and Bai S.  and Henderson YC  and Lin Y.  and Schalck A.  and Yan Y.  and Kumar T.  and Hu M.  and Sei E.  and Davis A.  and Wang F.  and Shaitelman SF  and Wang JR  and Chen K.  and Moulder S.  and Lai SY  and Navin NE},
  title     = {Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes},
  journal   = {Nature Biotechnology}
}

@article{Wu2021,
  doi       = {10.1038/s41467-021-22801-0},
  url       = {https://doi.org/10.1038/s41467-021-22801-0},
  year      = {2021},
  month     = may,
  publisher = {Springer Science and Business Media {LLC}},
  volume    = {12},
  number    = {1},
  author    = {Fengying Wu and Jue Fan and Yayi He and Anwen Xiong and Jia Yu and Yixin Li and Yan Zhang and Wencheng Zhao and Fei Zhou and Wei Li and Jie Zhang and Xiaosheng Zhang and Meng Qiao and Guanghui Gao and Shanhao Chen and Xiaoxia Chen and Xuefei Li and Likun Hou and Chunyan Wu and Chunxia Su and Shengxiang Ren and Margarete Odenthal and Reinhard Buettner and Nan Fang and Caicun Zhou},
  title     = {Single-cell profiling of tumor heterogeneity and the microenvironment in advanced non-small cell lung cancer},
  journal   = {Nature Communications}
}

@article{DeFalco2021,
  doi       = {10.1101/2021.11.20.469390},
  url       = {https://doi.org/10.1101/2021.11.20.469390},
  year      = {2021},
  month     = nov,
  publisher = {Cold Spring Harbor Laboratory},
  author    = {Antonio De Falco and Francesca Caruso and Xiao-Dong Su and Antonio Iavarone and Michele Ceccarelli},
  title     = {A fast variational algorithm to detect the clonal copy number substructure of tumors from single-cell data},
  journal   = {bioRxiv}
}

@article{Virshup_2023,
  doi       = {10.1038/s41587-023-01733-8},
  url       = {https://doi.org/10.1038%2Fs41587-023-01733-8},
  year      = 2023,
  month     = {apr},
  publisher = {Springer Science and Business Media {LLC}},
  author    = {Isaac Virshup and Danila Bredikhin and Lukas Heumos and Giovanni Palla and Gregor Sturm and Adam Gayoso and Ilia Kats and Mikaela Koutrouli and Philipp Angerer and Volker Bergen and Pierre Boyeau and Maren BÃ¼ttner and Gokcen Eraslan and David Fischer and Max Frank and Justin Hong and Michal Klein and Marius Lange and Romain Lopez and Mohammad Lotfollahi and Malte D. Luecken and Fidel Ramirez and Jeffrey Regier and Sergei Rybakov and Anna C. Schaar and Valeh Valiollah Pour Amiri and Philipp Weiler and Galen Xing and Bonnie Berger and Dana Pe'er and Aviv Regev and Sarah A. Teichmann and Francesca Finotello and F. Alexander Wolf and Nir Yosef and Oliver Stegle and Fabian J. Theis and},
  title     = {The scverse project provides a computational ecosystem for single-cell omics data analysis},
  journal   = {Nature Biotechnology}
}
