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202303063_MCZ-SR_3Dmeasurement-prioritylist.xlsx
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CONTRIBUTING.md
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infer_subc/organelles/cytoplasm.py
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notebooks/00.0_framework_overview.ipynb
notebooks/00.1_pipeline_setup.ipynb
notebooks/01_infer_nuclei_from-label.ipynb
notebooks/01a_infer_cytoplasm_from-composite.ipynb
notebooks/02_infer_cellmask_from-composite_with-nuclei.ipynb
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notebooks/05_infer_lysosome.ipynb
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notebooks/07_infer_golgi.ipynb
notebooks/08_infer_peroxisome.ipynb
notebooks/09_infer_ER.ipynb
notebooks/10_infer_lipid_droplet.ipynb
notebooks/11_regionprops.ipynb
notebooks/12_batch_process.ipynb
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notebooks/todelete/00.2_extract_optimal_Z.ipynb
notebooks/todelete/01_infer_nuclei_3D.ipynb
notebooks/todelete/02_infer_soma_3D.ipynb
notebooks/todelete/02a_infer_soma_3D.ipynb
notebooks/todelete/02b_infer_neurites_3D.ipynb
notebooks/todelete/02c_infer_wholecell_3D.ipynb
notebooks/todelete/03_infer_cytosol_3D.ipynb
notebooks/todelete/04_infer_lysosome_3D.ipynb
notebooks/todelete/05_infer_mitochondria_3D.ipynb
notebooks/todelete/06_infer_golgi_3D.ipynb
notebooks/todelete/07_infer_peroxisome_3D.ipynb
notebooks/todelete/08_infer_endoplasmic_reticulum_3D.ipynb
notebooks/todelete/09_infer_lipid_body_3D.ipynb
notebooks/todelete/10_batch_process_3D.ipynb
notebooks/todelete/10_batch_process_3Dv2.ipynb
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notebooks/todelete/_graveyard.ipynb
notebooks/todelete/new02a_infer_soma_3D.ipynb
notebooks/todelete/test_soma_seg.ipynb
tests/__init__.py
tests/conftest.py
tests/test_base.py