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improvelib/README.md
improvelib/__init__.py
improvelib/data_loader.py
improvelib/metrics.py
improvelib/split_generation.py
improvelib/utils.py
improvelib.egg-info/PKG-INFO
improvelib.egg-info/SOURCES.txt
improvelib.egg-info/dependency_links.txt
improvelib.egg-info/requires.txt
improvelib.egg-info/top_level.txt
improvelib/Benchmarks/Base.py
improvelib/Benchmarks/Docking.py
improvelib/Benchmarks/drug_response_prediction.py
improvelib/Tests/Data/common_parameters.yml
improvelib/Tests/Data/default.cfg
improvelib/applications/__init__.py
improvelib/applications/drug_response_prediction/__init__.py
improvelib/applications/drug_response_prediction/config.py
improvelib/applications/drug_response_prediction/drp_utils.py
improvelib/applications/drug_response_prediction/drug_utils.py
improvelib/applications/drug_response_prediction/omics_utils.py
improvelib/initializer/__init__.py
improvelib/initializer/cli.py
improvelib/initializer/cli_params_def.py
improvelib/initializer/config.py
improvelib/initializer/stage_config.py
scripts/download_csa.sh
scripts/get-benchmarks
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templates/MODEL_preprocess_improve.py
templates/MODEL_train_improve.py
templates/model_params_def.py
templates/setup_improve.sh
tests/README.md
tests/__init__.py
tests/default.cfg
tests/model_infer_improve.py
tests/model_preprocess_improve.py
tests/model_train_improve.py
tests/optional.cfg
tests/test_drp_params.py
tests/data/additional_command_line_parameters.yml
tests/data/parsl_config.py
workflows/.DS_Store
workflows/CSA/README.md
workflows/CSA/apps.py
workflows/CSA/common.py
workflows/CSA/csa
workflows/CSA/csa.sh
workflows/CSA/csa_params_def.py
workflows/CSA/download_csa.sh
workflows/CSA/hyperparameters_default.json
workflows/CSA/hyperparameters_hpo.json
workflows/CSA/infer.py
workflows/CSA/preprocess.py
workflows/CSA/train.py
workflows/CSA/train_and_infer.py
workflows/CSA/workflow_csa.py
workflows/CSA/config/lambda.py
workflows/CSA/config/lambda8.py
workflows/CSA/config/local.py
workflows/CSA/model_scripts/infer.sh
workflows/CSA/model_scripts/preprocess.sh
workflows/CSA/model_scripts/train.sh
workflows/bruteforce_csa/README.md
workflows/bruteforce_csa/csa_bruteforce_params.ini
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workflows/bruteforce_csa/csa_bruteforce_wf.py
workflows/deephyper_hpo/.gitkeep
workflows/deephyper_hpo/README.md
workflows/deephyper_hpo/hpo_deephyper_hyperparameters.json
workflows/deephyper_hpo/hpo_deephyper_hyperparameters_alternate.json
workflows/deephyper_hpo/hpo_deephyper_params.ini
workflows/deephyper_hpo/hpo_deephyper_params_PathDSP.ini
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workflows/deephyper_hpo/hpo_deephyper_subprocess.py
workflows/deephyper_hpo/hpo_deephyper_subprocess_train.sh
workflows/deephyper_hpo/unverified_scripts/execute_in_conda.sh
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workflows/deephyper_hpo/unverified_scripts/hpo_scale_singularity_debug.sh
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workflows/deephyper_hpo/unverified_scripts/set_affinity_gpu_polaris.sh
workflows/deephyper_hpo/unverified_scripts/subprocess_train_singularity.sh
workflows/lib/config/base.py
workflows/lib/config/csa.py
workflows/parsl_csa/.gitkeep
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workflows/parsl_csa/execute_in_conda.sh
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workflows/parsl_csa/hyperparameters_hpo.json
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workflows/parsl_csa/example_params_files/deepcdr_csa_params.ini
workflows/parsl_csa/example_params_files/graphdrp_csa_params.ini
workflows/parsl_csa/example_params_files/hidra_csa_params.ini
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workflows/parsl_csa/example_params_files/tcnns_csa_params.ini
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workflows/utils/csa/README.md
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workflows/utils/csa/LGBM/run.csa.small/infer/GDSCv2-gCSI/split_0/test_y_data_predicted.csv
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workflows/utils/lca/README.md
workflows/utils/lca/__init__.py
workflows/utils/lca/gen_lc_splits.sh
workflows/utils/lca/generate_lc_splits.py