LICENSE
MANIFEST.in
README.md
requirements.txt
setup.py
compass/__init__.py
compass/main.py
compass/augmentor/__init__.py
compass/augmentor/aug.py
compass/dataloader/__init__.py
compass/dataloader/data.py
compass/decoder/__init__.py
compass/decoder/decoder.py
compass/embedder/__init__.py
compass/embedder/embedder.py
compass/encoder/__init__.py
compass/encoder/encoder.py
compass/encoder/layer/FlashMultiHead.py
compass/encoder/layer/__init__.py
compass/encoder/layer/cosformer.py
compass/encoder/layer/flashformer.py
compass/encoder/layer/flowformer.py
compass/encoder/layer/norm.py
compass/encoder/layer/performer.py
compass/encoder/layer/transformer.py
compass/model/__init__.py
compass/model/adapt.py
compass/model/loss.py
compass/model/model.py
compass/model/saver.py
compass/model/scaler.py
compass/model/train.py
compass/model/tune.py
compass/projector/__init__.py
compass/projector/aggregator.py
compass/projector/cellpathwayaggregator.py
compass/projector/genesetaggregator.py
compass/projector/genesetscorer.py
compass/projector/projector.py
compass/tokenizer/__init__.py
compass/tokenizer/cancer_code.json
compass/tokenizer/concept_colors.xlsx
compass/tokenizer/conception.tsv
compass/tokenizer/conception_processed.tsv
compass/tokenizer/conceptor_gene_map.csv
compass/tokenizer/gene_tokens_long.json
compass/tokenizer/gene_tokens_short.json
compass/tokenizer/process_concept.ipynb
compass/utils/__init__.py
compass/utils/crmap.py
compass/utils/loader.py
compass/utils/plotter.py
compass/utils/sankey.py
compass/utils/scorer.py
immuno_compass.egg-info/PKG-INFO
immuno_compass.egg-info/SOURCES.txt
immuno_compass.egg-info/dependency_links.txt
immuno_compass.egg-info/requires.txt
immuno_compass.egg-info/top_level.txt