numpy<=1.26.4
pandas>=2.1.0
PyYAML>=5.3
scikit-learn>=0.23
python-glmnet
matplotlib>=3.1
editdistance
regex
tzlocal
airr>=1.5.1
pystache
dill>=0.3
plotly>=4
matplotlib-venn>=0.11
scipy<=1.12.0
bionumpy>=1.0.12
umap-learn
olga>=1.2.4
psutil
kaleido
logomaker
python-glmnet

[DL]
torch
keras
tensorflow
logomaker
gensim

[TCRdist]
tcrdist3>=0.1.6

[all]
tcrdist3>=0.1.6
sonnia
torch
stitchr
IMGTgeneDL
keras
tensorflow
fisher>=0.1.9
logomaker
fishersapi
gensim>=4
transformers
sentencepiece
httpx
datasets
tokenizers
tensorflow<=2.15.0
accelerate>=0.26.0

[embeddings]
transformers
torch
sentencepiece
esm
httpx

[fisher]
fisher>=0.1.9
fishersapi

[gen_models]
sonnia
torch
transformers
datasets
tokenizers
tensorflow<=2.15.0
accelerate>=0.26.0

[ligo]
stitchr
IMGTgeneDL

[word2vec]
gensim>=4
