Metadata-Version: 2.1
Name: imio
Version: 0.3.1
Summary: Loading and saving of image data.
Author-email: "Charly Rousseau, Adam Tyson" <code@adamltyson.com>
Project-URL: Homepage, https://github.com/brainglobe/imio
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Requires-Python: >=3.8
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: brainglobe-utils[slurmio]
Requires-Dist: natsort
Requires-Dist: nibabel
Requires-Dist: nibabel >=2.1.0
Requires-Dist: numpy
Requires-Dist: psutil
Requires-Dist: pyarrow
Requires-Dist: pynrrd
Requires-Dist: scikit-image
Requires-Dist: tifffile
Requires-Dist: tqdm
Provides-Extra: dev
Requires-Dist: black ; extra == 'dev'
Requires-Dist: pre-commit ; extra == 'dev'
Requires-Dist: pytest ; extra == 'dev'
Requires-Dist: pytest-cov ; extra == 'dev'

# This package has moved!

`imio` has been merged into [`brainglobe-utils`](https://github.com/brainglobe/brainglobe-utils) and will no longer be provided standalone.
If you want to continue using this package's functionality, we recommend you install `brainglobe-utils` and the corresponding submodule.

---

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# imio
Loading and saving of image data.

### About
The aim of imio is to be a lightweight image loading library for the file types
 supported by [cellfinder](https://github.com/brainglobe/cellfinder), and
 [brainreg](https://github.com/brainglobe/brainreg).

#### Supports loading of:
* Tiff stack `+`
* Tiff series (from a directory, a text file or a list of file paths). `*+`
* nrrd
* nifti (`.nii` & `.nii.gz`)

`*` Supports loading in parallel for speed

`+` Suports scaling on loading. E.g. downsampling to load images bigger than the
available RAM

#### Supports saving of:
* Tiff stack
* Tiff series
* nifti

### To install
```bash
pip install imio
```

## Contributing
Contributions to imio are more than welcome. Please see the [developers guide](https://brainglobe.info/developers/index.html).
