MANIFEST.in
README.md
requirements.txt
setup.py
img_pipe/.DS_Store
img_pipe/__init__.py
img_pipe/custom_atlas_label.py
img_pipe/dependencies.sh
img_pipe/img_pipe.py
img_pipe/scratch
img_pipe.egg-info/PKG-INFO
img_pipe.egg-info/SOURCES.txt
img_pipe.egg-info/dependency_links.txt
img_pipe.egg-info/requires.txt
img_pipe.egg-info/top_level.txt
img_pipe/SupplementalFiles/FS_colorLUT.py
img_pipe/SupplementalFiles/FreeSurferLUT.xml
img_pipe/SupplementalFiles/FreeSurferLUTRGBValues.npy
img_pipe/SupplementalFiles/FreeSurferLookupTable
img_pipe/SupplementalFiles/__init__.py
img_pipe/SupplementalFiles/clingrid_inds.mat
img_pipe/SupplementalFiles/cvs_avg35_inMNI152_affine_subj.txt
img_pipe/SupplementalFiles/img_pipe_results.png
img_pipe/SupplementalFiles/workflow.png
img_pipe/SupplementalScripts/.DS_Store
img_pipe/SupplementalScripts/__init__.py
img_pipe/SupplementalScripts/aseg2srf.sh
img_pipe/SupplementalScripts/electrode_picker.py
img_pipe/SupplementalScripts/icons/leftbrain.png
img_pipe/SupplementalScripts/icons/leftbrain_blackbg.png
img_pipe/SupplementalScripts/icons/rightbrain_blackbg.png
img_pipe/plotting/.DS_Store
img_pipe/plotting/__init__.py
img_pipe/plotting/ctmr_brain_plot.py
img_pipe/plotting/ctmr_brain_plot_example.ipynb
img_pipe/plotting/ctmr_brain_plot_simple_example.ipynb
img_pipe/plotting/loc_colormap.mat
img_pipe/plotting/mlab_3D_to_2D.py
img_pipe/plotting/plot_brain.py
img_pipe/plotting/plot_recon_anatomy.py
img_pipe/plotting/matlab/ctmr_gauss_plot.m
img_pipe/plotting/matlab/el_add.m
img_pipe/plotting/matlab/loc_view.m
img_pipe/plotting/matlab/plot_recon_anatomy.m
img_pipe/plotting/matlab/plot_recon_anatomy_compare_warped.m
img_pipe/plotting/matlab/tripatch.m
img_pipe/surface_warping_scripts/__init__.py
img_pipe/surface_warping_scripts/make_outer_surf.py
img_pipe/surface_warping_scripts/project_electrodes_anydirection.py
tests/__init__.py
tests/tests.py