future
pandas>=0.19.0
numexpr
pysam>=0.9.1
toolz
pyfaidx
scipy
intervaltree
pathlib2
htseq>=0.7.2
matplotlib
seaborn
typing; python_version < "3.5"

[de_single]
rpy2

[dev]
sphinx
sphinx-autobuild
sphinx-rtd-theme
bumpversion
pytest>=2.7
pytest-mock
pytest-helpers-namespace
pytest-cov
python-coveralls
seaborn
