.readthedocs.yaml
.travis.yml
CHANGELOG.md
CONTRIBUTING.rst
LICENSE.txt
MANIFEST.in
Makefile
README.rst
VERSION.txt
paper.bib
paper.md
pylintrc
pyproject.toml
setup.cfg
techstack.md
techstack.yml
tox.ini
data/lena_color.gif
data/lena_color.jpg
data/text.txt
data/dicom/cohort.zip
data/dicom/cor_hf.zip
data/dicom/cor_oblique.zip
data/dicom/cor_rl.zip
data/dicom/lena_color.dcm
data/dicom/sag_ap.zip
data/dicom/sag_hf.zip
data/dicom/sag_oblique.zip
data/dicom/time.zip
data/dicom/tra_oblique.zip
data/dicom/tra_rl.zip
data/dicom/TI/TI_1.MR.0021.0001.2021.06.08.10.04.29.806302.203193459.IMA
data/dicom/TI/TI_1.MR.0022.0001.2021.06.08.10.04.29.806302.203195509.IMA
data/dicom/TI/TI_1.MR.0023.0001.2021.06.08.10.04.29.806302.203197559.IMA
data/dicom/TI/TI_1.MR.0024.0001.2021.06.08.10.04.29.806302.203199609.IMA
data/dicom/TI/TI_1.MR.0025.0001.2021.06.08.10.04.29.806302.203201659.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0001.2019.02.07.14.42.45.461288.172175570.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0002.2019.02.07.14.42.45.461288.172174503.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0003.2019.02.07.14.42.45.461288.172175624.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0004.2019.02.07.14.42.45.461288.172174557.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0005.2019.02.07.14.42.45.461288.172175678.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0006.2019.02.07.14.42.45.461288.172174611.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0007.2019.02.07.14.42.45.461288.172175732.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0008.2019.02.07.14.42.45.461288.172174665.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0009.2019.02.07.14.42.45.461288.172175786.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0010.2019.02.07.14.42.45.461288.172174719.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0011.2019.02.07.14.42.45.461288.172175840.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0012.2019.02.07.14.42.45.461288.172174773.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0013.2019.02.07.14.42.45.461288.172175894.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0014.2019.02.07.14.42.45.461288.172174827.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0015.2019.02.07.14.42.45.461288.172175948.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0016.2019.02.07.14.42.45.461288.172174881.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0017.2019.02.07.14.42.45.461288.172176002.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0018.2019.02.07.14.42.45.461288.172174935.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0019.2019.02.07.14.42.45.461288.172176056.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0020.2019.02.07.14.42.45.461288.172174989.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0021.2019.02.07.14.42.45.461288.172176110.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0022.2019.02.07.14.42.45.461288.172175043.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0023.2019.02.07.14.42.45.461288.172176164.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0024.2019.02.07.14.42.45.461288.172175097.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0025.2019.02.07.14.42.45.461288.172176218.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0026.2019.02.07.14.42.45.461288.172175151.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0027.2019.02.07.14.42.45.461288.172176272.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0028.2019.02.07.14.42.45.461288.172175205.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0029.2019.02.07.14.42.45.461288.172176326.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0030.2019.02.07.14.42.45.461288.172175516.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0031.2019.02.07.14.42.45.461288.172175588.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0032.2019.02.07.14.42.45.461288.172174521.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0033.2019.02.07.14.42.45.461288.172175642.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0034.2019.02.07.14.42.45.461288.172174575.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0035.2019.02.07.14.42.45.461288.172175696.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0036.2019.02.07.14.42.45.461288.172174629.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0037.2019.02.07.14.42.45.461288.172175750.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0038.2019.02.07.14.42.45.461288.172174683.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0039.2019.02.07.14.42.45.461288.172175804.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0040.2019.02.07.14.42.45.461288.172174737.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0041.2019.02.07.14.42.45.461288.172175858.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0042.2019.02.07.14.42.45.461288.172174791.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0043.2019.02.07.14.42.45.461288.172175912.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0044.2019.02.07.14.42.45.461288.172174845.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0045.2019.02.07.14.42.45.461288.172175966.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0046.2019.02.07.14.42.45.461288.172174899.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0047.2019.02.07.14.42.45.461288.172176020.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0048.2019.02.07.14.42.45.461288.172174953.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0049.2019.02.07.14.42.45.461288.172176074.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0050.2019.02.07.14.42.45.461288.172175007.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0051.2019.02.07.14.42.45.461288.172176128.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0052.2019.02.07.14.42.45.461288.172175061.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0053.2019.02.07.14.42.45.461288.172176182.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0054.2019.02.07.14.42.45.461288.172175115.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0055.2019.02.07.14.42.45.461288.172176236.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0056.2019.02.07.14.42.45.461288.172175169.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0057.2019.02.07.14.42.45.461288.172176290.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0058.2019.02.07.14.42.45.461288.172175480.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0059.2019.02.07.14.42.45.461288.172176344.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0060.2019.02.07.14.42.45.461288.172175534.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0061.2019.02.07.14.42.45.461288.172175606.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0062.2019.02.07.14.42.45.461288.172174539.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0063.2019.02.07.14.42.45.461288.172175660.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0064.2019.02.07.14.42.45.461288.172174593.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0065.2019.02.07.14.42.45.461288.172175714.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0066.2019.02.07.14.42.45.461288.172174647.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0067.2019.02.07.14.42.45.461288.172175768.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0068.2019.02.07.14.42.45.461288.172174701.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0069.2019.02.07.14.42.45.461288.172175822.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0070.2019.02.07.14.42.45.461288.172174755.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0071.2019.02.07.14.42.45.461288.172175876.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0072.2019.02.07.14.42.45.461288.172174809.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0073.2019.02.07.14.42.45.461288.172175930.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0074.2019.02.07.14.42.45.461288.172174863.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0075.2019.02.07.14.42.45.461288.172175984.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0076.2019.02.07.14.42.45.461288.172174917.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0077.2019.02.07.14.42.45.461288.172176038.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0078.2019.02.07.14.42.45.461288.172174971.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0079.2019.02.07.14.42.45.461288.172176092.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0080.2019.02.07.14.42.45.461288.172175025.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0081.2019.02.07.14.42.45.461288.172176146.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0082.2019.02.07.14.42.45.461288.172175079.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0083.2019.02.07.14.42.45.461288.172176200.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0084.2019.02.07.14.42.45.461288.172175133.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0085.2019.02.07.14.42.45.461288.172176254.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0086.2019.02.07.14.42.45.461288.172175187.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0087.2019.02.07.14.42.45.461288.172176308.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0088.2019.02.07.14.42.45.461288.172175498.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0089.2019.02.07.14.42.45.461288.172176362.IMA
data/dicom/dwi/PHANTOM_T1.MR._.0007.0090.2019.02.07.14.42.45.461288.172175552.IMA
data/dicom/time/time00/Image_00019.dcm
data/dicom/time/time00/Image_00020.dcm
data/dicom/time/time00/Image_00021.dcm
data/dicom/time/time01/Image_00019.dcm
data/dicom/time/time01/Image_00020.dcm
data/dicom/time/time01/Image_00021.dcm
data/dicom/time/time02/Image_00019.dcm
data/dicom/time/time02/Image_00020.dcm
data/dicom/time/time02/Image_00021.dcm
data/dicom/time_all/Image_00000.dcm
data/dicom/time_all/Image_00001.dcm
data/dicom/time_all/Image_00002.dcm
data/dicom/time_all/Image_00003.dcm
data/dicom/time_all/Image_00004.dcm
data/dicom/time_all/Image_00005.dcm
data/dicom/time_all/Image_00006.dcm
data/dicom/time_all/Image_00007.dcm
data/dicom/time_all/Image_00008.dcm
data/itk/time.zip
data/itk/time/Image_00000.mha
data/itk/time/Image_00001.mha
data/itk/time/Image_00002.mha
data/mat/time.zip
data/mat/time/Image_00000.mat
data/nifti/cor_hf.nii.gz
data/nifti/cor_oblique.nii.gz
data/nifti/cor_rl.nii.gz
data/nifti/sag_ap.nii.gz
data/nifti/sag_hf.nii.gz
data/nifti/sag_oblique.nii.gz
data/nifti/time_all.zip
data/nifti/tra_oblique.nii.gz
data/nifti/tra_rl.nii.gz
data/nifti/time/time_all_fl3d_dynamic_20190207140517_14.json
data/nifti/time/time_all_fl3d_dynamic_20190207140517_14.nii.gz
data/nifti/time_all/time_all_fl3d_dynamic_20190207140517_14.json
data/nifti/time_all/time_all_fl3d_dynamic_20190207140517_14.nii.gz
data/pdf/A_Lovers_Complaint.pdf
data/pdf/pages/A_Lovers_Complaint_1.pdf
data/pdf/pages/A_Lovers_Complaint_2.pdf
data/pdf/pages/A_Lovers_Complaint_3.pdf
data/pdf/pages/A_Lovers_Complaint_4.pdf
data/pdf/pages/A_Lovers_Complaint_5.pdf
data/pdf/pages/A_Lovers_Complaint_6.pdf
data/tree/file0
data/tree/file1
data/tree/file2
docs/APIReference.rst
docs/APIReferenceApps.rst
docs/APIReferenceAppsDiffusion.rst
docs/APIReferenceArchives.rst
docs/APIReferenceCollections.rst
docs/APIReferenceFormats.rst
docs/APIReferenceImagedata.rst
docs/APIReferenceSeries.rst
docs/APIReferenceTransports.rst
docs/APIReferenceViewer.rst
docs/Collections.rst
docs/Colors.rst
docs/CommandLine.rst
docs/DICOMAttributes.rst
docs/DeveloperDocumentation.rst
docs/Examples.rst
docs/Figure_Architecture.png
docs/Input_output.rst
docs/Installation.rst
docs/Introduction.rst
docs/Makefile
docs/Notebook.rst
docs/Plugin_Architecture.docx
docs/Plugin_Architecture.png
docs/Plugins.rst
docs/README
docs/Sorting.rst
docs/Tutorial.rst
docs/UserGuide.rst
docs/conf.py
docs/fuse_mask_blend.png
docs/index.rst
docs/make.bat
docs/requirements.txt
docs/transformation.tex
docs/source/modules.rst
docs/source/setup.rst
docs/source/src.imagedata.apps.Siemens.rst
docs/source/src.imagedata.apps.rst
docs/source/src.imagedata.archives.rst
docs/source/src.imagedata.formats.dicomlib.rst
docs/source/src.imagedata.formats.rst
docs/source/src.imagedata.rst
docs/source/src.imagedata.transports.rst
docs/source/src.rst
docs/source/tests.rst
src/__init__.py
src/imagedata/__init__.py
src/imagedata/axis.py
src/imagedata/cmdline.py
src/imagedata/collections.py
src/imagedata/header.py
src/imagedata/image_data.py
src/imagedata/list_plugins.py
src/imagedata/readdata.py
src/imagedata/series.py
src/imagedata/viewer.py
src/imagedata.egg-info/PKG-INFO
src/imagedata.egg-info/SOURCES.txt
src/imagedata.egg-info/dependency_links.txt
src/imagedata.egg-info/entry_points.txt
src/imagedata.egg-info/requires.txt
src/imagedata.egg-info/top_level.txt
src/imagedata/apps/__init__.py
src/imagedata/apps/diffusion.py
src/imagedata/apps/Siemens/ROI.py
src/imagedata/apps/Siemens/__init__.py
src/imagedata/apps/Siemens/draw_antialiased.py
src/imagedata/apps/Siemens/evidence2mask.py
src/imagedata/apps/Siemens/evidence_main.py
src/imagedata/archives/__init__.py
src/imagedata/archives/abstractarchive.py
src/imagedata/archives/filesystemarchive.py
src/imagedata/archives/zipfilearchive.py
src/imagedata/formats/__init__.py
src/imagedata/formats/abstractplugin.py
src/imagedata/formats/dicomplugin.py
src/imagedata/formats/itkplugin.py
src/imagedata/formats/matplugin.py
src/imagedata/formats/niftiplugin.py
src/imagedata/formats/dicomlib/__init__.py
src/imagedata/formats/dicomlib/uid.py
src/imagedata/transports/__init__.py
src/imagedata/transports/abstracttransport.py
src/imagedata/transports/dicomtransport.py
src/imagedata/transports/filetransport.py
src/imagedata/transports/xnattransport.py
tests/__init__.py
tests/compare_headers.py
tests/context.py
tests/test_archive_file.py
tests/test_archive_zip.py
tests/test_axis.py
tests/test_collections.py
tests/test_formats_dicom.py
tests/test_formats_dicom_color.py
tests/test_formats_dicom_template.py
tests/test_formats_dicom_zip.py
tests/test_formats_itk.py
tests/test_formats_itk_template.py
tests/test_formats_itk_zip.py
tests/test_formats_mat.py
tests/test_formats_mat_zip.py
tests/test_formats_nifti.py
tests/test_formats_nifti_zip.py
tests/test_series.py
tests/test_transport_dicomtransport.py
tests/test_transport_filetransport.py
tests/test_transport_xnattransport.py
tests/test_version.py
tests/test_viewer.py