Metadata-Version: 2.4
Name: ikiss
Version: 2.0.0
Summary: iKISS is a pipeline to detect kmers under selection.
Author-email: "Julie Orjuela (DIADE-IRD)" <julie.orjuela@ird.fr>
License-Expression: GPL-3.0-or-later
Project-URL: Homepage, https://forge.ird.fr/diade/iKISS.git
Project-URL: Documentation, https://ikiss.readthedocs.io/en/latest/
Project-URL: repository, https://forge.ird.fr/diade/iKISS.git
Project-URL: Downloads, https://forge.ird.fr/diade/iKISS/-/releases/
Project-URL: Bug Tracker, https://forge.ird.fr/diade/iKISS/-/issues
Project-URL: Source Code, https://forge.ird.fr/diade/iKISS.git
Keywords: snakemake,kmers,selection,diversity,structure,association
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: End Users/Desktop
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: R
Classifier: Natural Language :: English
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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License-File: LICENCE
License-File: AUTHORS.md
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Dynamic: license-file

.. image:: docs/source/_static/logo_ikiss.png
    :target: https://forge.ird.fr/diade/iKISS

|PythonVersions| |SnakemakeVersions| |Singularity|

**iKISS** (Kmer Inference Selection and Structure) is a snakemake reference-Free pipeline for inferring diversity, structuration, selection and genotype-phenotype association.

iKISS uses `KmersGWAS <https://github.com/voichek/kmersGWAS>`_,
`PCADAPT <https://cran.r-project.org/web/packages/pcadapt/readme/README.html>`_
and `LFMM <https://bcm-uga.github.io/lfmm/articles/lfmm>`_  to select genomics regions under selection.


Documentation
==============

Online documentation is on `ReadTheDocs <https://ikiss.readthedocs.io/en/latest/index.html>`_.


Authors
========

.. image:: docs/source/_static/ird_small.png
    :target: https://www.ird.fr

* `Julie Orjuela <mailto:julie.orjuela@ird.fr>`_ (UMR DIADE - IRD)

* Yves Vigouroux (UMR DIADE - IRD)


Licence
========

Licensed under  `GNU GENERAL PUBLIC LICENSE V3 <https://forge.ird.fr/diade/iKISS/-/blob/master/LICENCE?ref_type=heads>`_.

Intellectual property belongs to `IRD <https://www.ird.fr>`_ and authors.


.. |PythonVersions| image:: https://img.shields.io/badge/python-3.7%2B-blue
   :target: https://www.python.org/downloads
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   :target: https://snakemake.readthedocs.io
.. |Singularity| image:: https://img.shields.io/badge/singularity-≥3.3.0-7E4C74.svg
   :target: https://sylabs.io/docs/
.. |readthedocs| image:: https://pbs.twimg.com/media/E5oBxcRXoAEBSp1.png
   :target: https://culebront-pipeline.readthedocs.io/en/latest/
   :width: 400px


