CHANGES.txt
COPYING
MANIFEST.in
README
iggy.py
opt_graph.py
setup.py
data/EGF/EGFNetworkCompressed.sif
data/EGF/EGFNetworkCompressed32.sif
data/EGF/EGFNetworkCompressed42.sif
data/EGF/EGFNetworkPreprocessed.sif
data/EGF/EGFNetworkRaw.sif
data/EGF/EGFdata.txt
data/EGF/EGFinputs.txt
data/EGF/EGFmeasurements.txt
data/Ecoli/Ecoli_2013.sif
data/Ecoli/Ecoli_component_compressed.sif
data/Ecoli/Readme
data/Ecoli/exp/exp102.obs
data/Ecoli/exp/exp104.obs
data/Ecoli/exp/exp107.obs
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data/Ecoli/exp/exp14.obs
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data/Ecoli/exp/exp5.obs
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data/Ecoli/exp/exp9.obs
data/Ecoli/exp/exp90.obs
data/Ecoli/exp/exp94.obs
data/Ecoli/exp/exp98.obs
data/Exp_insilco/measfile.txt
data/Exp_insilco/netfile.cys
data/Exp_insilco/netfile.png
data/Exp_insilco/netfile.sif
data/Exp_insilco/netfile_original.png
data/Exp_insilco/netfile_original.sif
data/Exp_insilco/pertfile.txt
data/Liver/PKN-ExtLiverMSBmodUP.sif
data/Liver/PKN-ExtLiverMSBmodUP_COMPRESSED.sif
data/Liver/exp/MCP_HepG2_FC_00.obs
data/Liver/exp/MCP_HepG2_FC_01.obs
data/Liver/exp/MCP_HepG2_FC_02.obs
data/Liver/exp/MCP_HepG2_FC_03.obs
data/Liver/exp/MCP_HepG2_FC_04.obs
data/Liver/exp/MCP_HepG2_FC_05.obs
data/Liver/exp/MCP_HepG2_FC_06.obs
data/Liver/exp/MCP_HepG2_FC_07.obs
data/Liver/exp/MCP_HepG2_FC_08.obs
data/Liver/exp/MCP_HepG2_FC_09.obs
data/Liver/exp/MCP_HepG2_FC_10.obs
data/Liver/exp/MCP_HepG2_FC_11.obs
data/Liver/exp/MCP_HepG2_FC_12.obs
data/Liver/exp/MCP_HepG2_FC_13.obs
data/Liver/exp/MCP_HepG2_FC_14.obs
data/Liver/exp/MCP_HepG2_FC_15.obs
data/Liver/exp/MCP_HepG2_FC_16.obs
data/Liver/exp/MCP_HepG2_FC_17.obs
data/Liver/exp/MCP_HepG2_FC_18.obs
data/Liver/exp/MCP_HepG2_FC_19.obs
data/Liver/exp/MCP_HepG2_FC_20.obs
data/Liver/exp/MCP_HepG2_FC_21.obs
data/Liver/exp/MCP_HepG2_FC_22.obs
data/Liver/exp/MCP_HepG2_FC_23.obs
data/Liver/exp/MCP_HepG2_FC_24.obs
data/Liver/exp/MCP_HepG2_FC_25.obs
data/Liver/exp/MCP_HepG2_FC_26.obs
data/Liver/exp/MCP_HepG2_FC_27.obs
data/Liver/exp/MCP_HepG2_FC_28.obs
data/Liver/exp/MCP_HepG2_FC_29.obs
data/Liver/exp/MCP_HepG2_FC_30.obs
data/Liver/exp/MCP_HepG2_FC_31.obs
data/Liver/exp/MCP_HepG2_FC_32.obs
data/Liver/exp/MCP_HepG2_FC_33.obs
data/Liver/exp/MCP_HepG2_FC_34.obs
data/Liver/exp/MCP_HepG2_FC_35.obs
data/Liver/exp/MCP_HepG2_FC_36.obs
data/Liver/exp/MCP_HepG2_FC_37.obs
data/Liver/exp/MCP_HepG2_FC_38.obs
data/Liver/exp/MCP_HepG2_FC_39.obs
data/Liver/exp/MCP_HepG2_FC_40.obs
data/Liver/exp/MCP_HepG2_FC_41.obs
data/Liver/exp/MCP_HepG2_FC_42.obs
data/Liver/exp/MCP_HepG2_FC_43.obs
data/Liver/exp/MCP_HepG2_FC_44.obs
data/Liver/exp/MCP_HepG2_FC_45.obs
data/Liver/exp/MCP_HepG2_FC_46.obs
data/Liver/exp/MCP_HepG2_FC_47.obs
data/Liver/exp/MCP_HepG2_FC_48.obs
data/Liver/exp/MCP_HepG2_FC_49.obs
data/Liver/exp/MCP_HepG2_FC_50.obs
data/Liver/exp/MCP_HepG2_FC_51.obs
data/Liver/exp/MCP_HepG2_FC_52.obs
data/Liver/exp/MCP_HepG2_FC_53.obs
data/Liver/exp/MCP_HepG2_FC_54.obs
data/Liver/exp/MCP_HepG2_FC_55.obs
data/Liver/exp/MCP_HepG2_FC_56.obs
data/Liver/exp/MCP_HepG2_FC_57.obs
data/Liver/exp/MCP_HepG2_FC_58.obs
data/Liver/exp/MCP_HepG2_FC_59.obs
data/Liver/exp/MCP_HepG2_FC_60.obs
data/Liver/exp/MCP_HepG2_FC_61.obs
data/Liver/exp/MCP_HepG2_FC_62.obs
data/Liver/exp/MCP_HepG2_FC_63.obs
iggy.egg-info/PKG-INFO
iggy.egg-info/PKG-INFO~
iggy.egg-info/SOURCES.txt
iggy.egg-info/dependency_links.txt
iggy.egg-info/requires.txt
iggy.egg-info/top_level.txt
src/__init__.py
src/bioquali.py
src/graph_parser.py
src/profile_parser.py
src/query.py
src/sif_parser.py
src/utils.py
src/encodings/add_edges.lp
src/encodings/add_influence.lp
src/encodings/constrained_zero.lp
src/encodings/error_measure.lp
src/encodings/founded_constraints.lp
src/encodings/guess_inputs.lp
src/encodings/keep_inputs_constraint.lp
src/encodings/keep_observations_constraint.lp
src/encodings/luca_constraints.lp
src/encodings/mics.lp
src/encodings/minimize_added_edges.lp
src/encodings/minimize_added_influnces.lp
src/encodings/minimize_removed_edges.lp
src/encodings/minimize_repairs.lp
src/encodings/minimize_unweighted_error.lp
src/encodings/minimize_weighted_error.lp
src/encodings/remove_edges.lp
src/encodings/show_errors.lp
src/encodings/show_predictions.lp
src/encodings/show_repairs.lp
src/encodings/show_vlabels.lp
src/encodings/sign-cons-2.lp
src/encodings/sign-cons-3.lp
src/encodings/unsigned.lp