CHANGES.rst
MANIFEST.in
README.rst
setup.cfg
setup.py
versioneer.py
doc/Makefile
doc/advanced.rst
doc/changes.rst
doc/conf.py
doc/develop.rst
doc/faq.rst
doc/guide.rst
doc/index.rst
doc/installation.rst
doc/manual-installation.rst
doc/testing.rst
igdiscover/Snakefile
igdiscover/__init__.py
igdiscover/__main__.py
igdiscover/_version.py
igdiscover/clonoquery.py
igdiscover/clonotypes.py
igdiscover/cluster.py
igdiscover/clusterplot.py
igdiscover/commonv.py
igdiscover/config.py
igdiscover/count.py
igdiscover/dendrogram.py
igdiscover/dereplicate.py
igdiscover/discover.py
igdiscover/discoverj.py
igdiscover/empty.aux
igdiscover/errorplot.py
igdiscover/filter.py
igdiscover/germlinefilter.py
igdiscover/group.py
igdiscover/haplotype.py
igdiscover/igblast.py
igdiscover/igdiscover.yaml
igdiscover/init.py
igdiscover/multidiscover.py
igdiscover/parse.py
igdiscover/plotalleles.py
igdiscover/rename.py
igdiscover/run.py
igdiscover/species.py
igdiscover/table.py
igdiscover/trie.py
igdiscover/union.py
igdiscover/upstream.py
igdiscover/utils.py
igdiscover.egg-info/PKG-INFO
igdiscover.egg-info/SOURCES.txt
igdiscover.egg-info/dependency_links.txt
igdiscover.egg-info/entry_points.txt
igdiscover.egg-info/requires.txt
igdiscover.egg-info/top_level.txt
tests/__init__.py
tests/test_cluster.py
tests/test_commands.py
tests/test_merger.py
tests/test_parse.py
tests/test_species.py
tests/test_trie.py
tests/test_utils.py
tests/utils.py