# -*- coding: utf-8 -*-
from setuptools import setup

packages = \
['ifpd2', 'ifpd2.scripts']

package_data = \
{'': ['*']}

install_requires = \
['numpy>=1.20.1,<2.0.0',
 'pandas>=1.2.2,<2.0.0',
 'rich>=9.10.0,<10.0.0',
 'tqdm>=4.58.0,<5.0.0']

entry_points = \
{'console_scripts': ['ifpd2 = ifpd2.scripts.ifpd2:main']}

setup_kwargs = {
    'name': 'ifpd2',
    'version': '1.0.0a0',
    'description': 'An iFISH probe design pipeline (II)',
    'long_description': "# iFISH Probe Design (II)\n\n![](https://img.shields.io/github/license/ggirelli/ifpd2.svg?style=flat)   ![](https://github.com/ggirelli/ifpd2/workflows/Python%20package/badge.svg?branch=main&event=push)  \n![PyPI - Python Version](https://img.shields.io/pypi/pyversions/ifpd2) ![PyPI - Format](https://img.shields.io/pypi/format/ifpd2) ![PyPI - Status](https://img.shields.io/pypi/status/ifpd2)  \n![](https://img.shields.io/github/release/ggirelli/ifpd2.svg?style=flat) ![](https://img.shields.io/github/release-date/ggirelli/ifpd2.svg?style=flat) ![](https://img.shields.io/github/languages/code-size/ggirelli/ifpd2.svg?style=flat)  \n![](https://img.shields.io/github/watchers/ggirelli/ifpd2.svg?label=Watch&style=social) ![](https://img.shields.io/github/stars/ggirelli/ifpd2.svg?style=social)\n\n[PyPi](https://pypi.org/project/ifpd2/) | [docs](https://ggirelli.github.io/ifpd2/)\n\n`ifpd2` is a Python3.7+ package containing tools for selection of complementary oligonucleotides to build iFISH probes. It is based on our previous `ifpd` package, but works with a different and more detailed database format, allowing for more precise control on the probe design process. Read the online [documentation](https://ggirelli.github.io/ifpd2/) for more details.\n\n## Requirements\n\n`ifpd2` is fully implemented in Python3.7+, thus you need the corresponding Python version to run it. Check out [here](https://realpython.com/installing-python/) how to install Python+ on your machine if you don't have it yet.\n\n`ifpd2` has been tested with Python 3.7 and 3.8. We recommend installing it using `pipx` (see [below](https://github.com/ggirelli/ifpd2#installation)) to avoid dependency conflicts with other packages. The packages it depends on are listed in our [dependency graph](https://github.com/ggirelli/ifpd2/network/dependencies). We use [`poetry`](https://github.com/python-poetry/poetry) to handle our dependencies.\n\n## Installation\n\nWe recommend installing `ifpd2` using [`pipx`](https://github.com/pipxproject/pipx). Check how to install `pipx` [here](https://github.com/pipxproject/pipx#install-pipx) if you don't have it yet!\n\nOnce you have `pipx` ready on your system, install the latest stable release of `ifpd2` by running: `pipx install ifpd2`. If you see the stars (✨ 🌟 ✨), then the installation went well!\n\n## Usage\n\nAll `ifpd2` commands are accessible via the `ifpd2` keyword on the terminal. For each command, you can access its help page by using the `-h` option. More details on how to run `ifpd2` are available in the online [documentation](https://ggirelli.github.io/ifpd2).\n\n## Contributing\n\nWe welcome any contributions to `ifpd2`. In short, we use [`black`](https://github.com/psf/black) to standardize code format. Any code change also needs to pass `mypy` checks. For more details, please refer to our [contribution guidelines](https://github.com/ggirelli/ifpd2/blob/main/CONTRIBUTING.md) if this is your first time contributing! Also, check out our [code of conduct](https://github.com/ggirelli/ifpd2/blob/main/CODE_OF_CONDUCT.md).\n\n## License\n\n`MIT License - Copyright (c) 2021 Gabriele Girelli`\n",
    'author': 'Gabriele Girelli',
    'author_email': 'gigi.ga90@gmail.com',
    'maintainer': None,
    'maintainer_email': None,
    'url': 'https://github.com/ggirelli/iFISH-Probe-Design',
    'packages': packages,
    'package_data': package_data,
    'install_requires': install_requires,
    'entry_points': entry_points,
    'python_requires': '>=3.7.1,<4.0.0',
}


setup(**setup_kwargs)
