Metadata-Version: 2.1
Name: ifpd
Version: 2.0.1.post4
Summary: An iFISH probe design pipeline, with web interface included.
Home-page: https://github.com/ggirelli/iFISH-Probe-Design
Author: Gabriele Girelli
Author-email: gabriele.girelli@scilifelab.se
License: MIT
Description: # iFISH-Probe-Design v2.0.1.post4
        
        **iFISH-Probe-Design** (`ifpd`) is a Python3 package containing tools for selection of complementary oligonucleotides to build iFISH probes. It also includes a web interface, which simplifies the procedure by removing any requirement for programming skills. Read the online [documentation](https://ggirelli.github.io/iFISH-probe-design/) for more details.
        
        Installation
        ---
        
        If you have Python3 and `pip3` installed on your computer, you can simply run `sudo -H pip3 install ifpd` on a terminal. That's it! As easy as it gets.
        
        You can also install from github (any point in history, although we suggest to stick with release tags) as follows:
        
        ```bash
        git clone https://github.com/ggirelli/iFISH-probe-design/
        cd iFISH-probe-design
        sudo -H pip3 install .
        ```
        
        For a nice guide on installing packages served through PyPI, check out [this tutorial](https://packaging.python.org/tutorials/installing-packages/).
        
        Requirements
        ---
        
        **iFISH-Probe-Designer** is fully implemented in Python3, thus you need Python3 to run it. Check out [here](https://realpython.com/installing-python/) how to install Python3 on your machine if you don't have it yet.
        
        If you installed this package using `pip3` (as explained [above](#installation)), then all required libraries were also automatically installed. Nonetheless, here is a list (with version) of the required libraries:
        
        * `bottle>=0.12.13` and `paste>=2.0.3`: to run the web server interface.
        * `ggc>=0.0.3`: for functionalities common to all my packages.
        * `matplotlib>=3.0.0`: to plot.
        * `numpy>=1.14.2`, `pandas>=0.22.0`, and `scipy>=1.0.0`: for data manipulation.
        
        Usage
        ---
        
        More details on how to run **iFISH-Probe-Design** are available in the online [documentation](https://ggirelli.github.io/iFISH-probe-design/usage).
        
        Contributing
        ---
        
        We welcome any contributions to `iFISH-Probe-Design`. Please, refer to the [contribution guidelines](https://ggirelli.github.io/iFISH-probe-design/contributing) if this is your first time contributing! Also, check out our [code of conduct](https://ggirelli.github.io/iFISH-probe-design/code_of_conduct).
        
        License
        ---
        
        ```
        MIT License
        Copyright (c) 2016-2019 Gabriele Girelli
        ```
        
Keywords: biology cell DNA RNA FISH fluorescence hybridization bioimaging genome
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3 :: Only
Description-Content-Type: text/markdown
