LICENSE.txt
MANIFEST.in
README.rst
codecov.yml
setup.py
docs/Makefile
docs/_config.yml
docs/conf.py
docs/iCallSV.rst
docs/index.rst
docs/make.bat
docs/_build/doctrees/environment.pickle
docs/_build/doctrees/iCallSV.doctree
docs/_build/doctrees/index.doctree
docs/_build/html/.buildinfo
docs/_build/html/genindex.html
docs/_build/html/iCallSV.html
docs/_build/html/index.html
docs/_build/html/objects.inv
docs/_build/html/py-modindex.html
docs/_build/html/search.html
docs/_build/html/searchindex.js
docs/_build/html/_modules/index.html
docs/_build/html/_modules/iCallSV/FilterDellyCalls.html
docs/_build/html/_modules/iCallSV/Run_Delly.html
docs/_build/html/_modules/iCallSV/Run_iAnnotateSV.html
docs/_build/html/_modules/iCallSV/Run_samblaster.html
docs/_build/html/_modules/iCallSV/Run_targetSeqView.html
docs/_build/html/_modules/iCallSV/checkBlackList.html
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docs/_build/html/_modules/iCallSV/makebamindex.html
docs/_build/html/_modules/iCallSV/mergeFinalFiles.html
docs/_build/html/_modules/iCallSV/sortbamByCoordinate.html
docs/_build/html/_modules/iCallSV/sortbamByReadName.html
docs/_build/html/_sources/iCallSV.txt
docs/_build/html/_sources/index.txt
docs/_build/html/_static/ajax-loader.gif
docs/_build/html/_static/basic.css
docs/_build/html/_static/comment-bright.png
docs/_build/html/_static/comment-close.png
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docs/_build/html/_static/doctools.js
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docs/_build/json/.buildinfo
docs/_build/json/environment.pickle
docs/_build/json/genindex.fjson
docs/_build/json/globalcontext.json
docs/_build/json/iCallSV.fjson
docs/_build/json/index.fjson
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iCallSV/FilterDellyCalls.py
iCallSV/Run_Delly.py
iCallSV/Run_iAnnotateSV.py
iCallSV/Run_samblaster.py
iCallSV/Run_targetSeqView.py
iCallSV/__init__.py
iCallSV/checkBlackList.py
iCallSV/checkHotSpotList.py
iCallSV/checkparameters.py
iCallSV/combineVCF.py
iCallSV/dellyVcf2Tab.py
iCallSV/dellyVcf2targetSeqView.py
iCallSV/filterAnnotatedSV.py
iCallSV/helper.py
iCallSV/iCallSV.py
iCallSV/launchThreads.py
iCallSV/launch_FilterDellyCalls.py
iCallSV/launch_Run_Delly.py
iCallSV/make_analysis_dir.py
iCallSV/makebamindex.py
iCallSV/mergeFinalFiles.py
iCallSV/sortbamByCoordinate.py
iCallSV/sortbamByReadName.py
iCallSV.egg-info/PKG-INFO
iCallSV.egg-info/SOURCES.txt
iCallSV.egg-info/dependency_links.txt
iCallSV.egg-info/not-zip-safe
iCallSV.egg-info/requires.txt
iCallSV.egg-info/top_level.txt
iCallSV/R/install_requrements_targetSeqView.txt
iCallSV/R/Rscripts/calculateConfidenceScore.R
iCallSV/data/blacklist.txt
iCallSV/data/blacklistgenes.txt
iCallSV/data/genesToInclude.txt
iCallSV/data/hotspotgenes.txt
iCallSV/utilities/check_cDNA_contamination.py
iCallSV/utilities/iCallSV_dmp_wrapper.py