{"body": "<h1>All modules for which code is available</h1>\n<ul><li><a href=\"iCallSV/FilterDellyCalls/\">iCallSV.FilterDellyCalls</a></li>\n<li><a href=\"iCallSV/Run_Delly/\">iCallSV.Run_Delly</a></li>\n<li><a href=\"iCallSV/Run_iAnnotateSV/\">iCallSV.Run_iAnnotateSV</a></li>\n<li><a href=\"iCallSV/Run_samblaster/\">iCallSV.Run_samblaster</a></li>\n<li><a href=\"iCallSV/Run_targetSeqView/\">iCallSV.Run_targetSeqView</a></li>\n<li><a href=\"iCallSV/checkBlackList/\">iCallSV.checkBlackList</a></li>\n<li><a href=\"iCallSV/checkHotSpotList/\">iCallSV.checkHotSpotList</a></li>\n<li><a href=\"iCallSV/checkparameters/\">iCallSV.checkparameters</a></li>\n<li><a href=\"iCallSV/combineVCF/\">iCallSV.combineVCF</a></li>\n<li><a href=\"iCallSV/dellyVcf2Tab/\">iCallSV.dellyVcf2Tab</a></li>\n<li><a href=\"iCallSV/dellyVcf2targetSeqView/\">iCallSV.dellyVcf2targetSeqView</a></li>\n<li><a href=\"iCallSV/filterAnnotatedSV/\">iCallSV.filterAnnotatedSV</a></li>\n<li><a href=\"iCallSV/launchThreads/\">iCallSV.launchThreads</a></li>\n<li><a href=\"iCallSV/launch_FilterDellyCalls/\">iCallSV.launch_FilterDellyCalls</a></li>\n<li><a href=\"iCallSV/launch_Run_Delly/\">iCallSV.launch_Run_Delly</a></li>\n<li><a href=\"iCallSV/make_analysis_dir/\">iCallSV.make_analysis_dir</a></li>\n<li><a href=\"iCallSV/makebamindex/\">iCallSV.makebamindex</a></li>\n<li><a href=\"iCallSV/mergeFinalFiles/\">iCallSV.mergeFinalFiles</a></li>\n<li><a href=\"iCallSV/sortbamByCoordinate/\">iCallSV.sortbamByCoordinate</a></li>\n<li><a href=\"iCallSV/sortbamByReadName/\">iCallSV.sortbamByReadName</a></li>\n</ul>", "title": "Overview: module code", "customsidebar": null, "current_page_name": "_modules/index", "sidebars": null, "alabaster_version": "0.7.9"}