LICENSE
MANIFEST.in
README.md
pyproject.toml
ibis/__init__.py
ibis/ibis.py
ibis/config/template_coassemble.yaml
ibis/config/template_evaluate.yaml
ibis/workflow/coassemble.smk
ibis/workflow/evaluate.smk
ibis/workflow/env/aviary.yml
ibis/workflow/env/bbtools.yml
ibis/workflow/env/coverm.yml
ibis/workflow/env/kingfisher.yml
ibis/workflow/env/prodigal.yml
ibis/workflow/env/r.yml
ibis/workflow/env/singlem.yml
ibis/workflow/scripts/aviary_commands.py
ibis/workflow/scripts/cluster_graph.py
ibis/workflow/scripts/collect_reference_bins.py
ibis/workflow/scripts/evaluate.py
ibis/workflow/scripts/is_interleaved.py
ibis/workflow/scripts/no_genomes.py
ibis/workflow/scripts/query_processing.py
ibis/workflow/scripts/separate_SingleM_seq.py
ibis/workflow/scripts/summarise_coassemblies.py
ibis/workflow/scripts/target_elusive.py
ibis_genome.egg-info/PKG-INFO
ibis_genome.egg-info/SOURCES.txt
ibis_genome.egg-info/dependency_links.txt
ibis_genome.egg-info/entry_points.txt
ibis_genome.egg-info/requires.txt
ibis_genome.egg-info/top_level.txt
test/test_aviary_commands.py
test/test_build.py
test/test_cluster_graph.py
test/test_coassemble.py
test/test_collect_reference_bins.py
test/test_evaluate.py
test/test_evaluate_script.py
test/test_is_interleaved.py
test/test_iterate.py
test/test_manual.py
test/test_no_genomes.py
test/test_query_processing.py
test/test_target_elusive.py
test/test_update.py