CHANGELOG
MANIFEST.in
README
ez_setup.py
ibidas_env.sh
run
setup.cfg
setup.py
Ibidas.egg-info/PKG-INFO
Ibidas.egg-info/SOURCES.txt
Ibidas.egg-info/dependency_links.txt
Ibidas.egg-info/requires.txt
Ibidas.egg-info/top_level.txt
bin/ibidas
bin/ibidas_shell.py
bin/python_2_please
docs/:w
docs/basic_concepts.rst
docs/chromo_corr.png
docs/chromo_spec.png
docs/conf.py
docs/depend.txt
docs/example_code.py
docs/examples.rst
docs/get_module.rst
docs/ibidas_module.rst
docs/ibidas_rep.rst
docs/ibidas_type.rst
docs/index.rst
docs/inout_dist.png
docs/installation.rst
docs/todo.txt
docs/tutorial.rst
docs/tutorial_example1.rst
docs/tutorial_example2.rst
docs/_static/.placeholder
docs/_templates/.placeholder
ibidas/__init__.py
ibidas/algs.py
ibidas/command_parser.py
ibidas/constants.py
ibidas/download_cache.py
ibidas/engines.py
ibidas/ops.py
ibidas/parser_objs.py
ibidas/pre.py
ibidas/query_context.py
ibidas/query_graph.py
ibidas/repops.py
ibidas/repops_dim.py
ibidas/repops_funcs.py
ibidas/repops_multi.py
ibidas/repops_slice.py
ibidas/representor.py
ibidas/server.py
ibidas/itypes/__init__.py
ibidas/itypes/casts.py
ibidas/itypes/convertors.py
ibidas/itypes/detector.py
ibidas/itypes/dimensions.py
ibidas/itypes/dimpaths.py
ibidas/itypes/rtypes.py
ibidas/itypes/type_attribute_freeze.py
ibidas/itypes/typeops.py
ibidas/passes/__init__.py
ibidas/passes/annot_objs.py
ibidas/passes/annotate_replinks.py
ibidas/passes/create_expression_objects.py
ibidas/passes/create_graph.py
ibidas/passes/cytoscape_vis.py
ibidas/passes/ensure_info.py
ibidas/passes/manager.py
ibidas/passes/prepeephole.py
ibidas/passes/python_peephole.py
ibidas/passes/serialize_exec.py
ibidas/passes/transposer.py
ibidas/passes/wrapper_planner.py
ibidas/thirdparty/__init__.py
ibidas/thirdparty/console.py
ibidas/thirdparty/padnums.py
ibidas/thirdparty/rad_util.py
ibidas/thirdparty/spark.py
ibidas/thirdparty/tableprint.py
ibidas/thirdparty/topsort.py
ibidas/thirdparty/xdot.py
ibidas/utils/__init__.py
ibidas/utils/config.py
ibidas/utils/context.py
ibidas/utils/delay_import.py
ibidas/utils/infix.py
ibidas/utils/missing.py
ibidas/utils/module_types.py
ibidas/utils/nested_array.py
ibidas/utils/sparse_arrays.py
ibidas/utils/topological_sort.py
ibidas/utils/toposort.py
ibidas/utils/util.py
ibidas/wrappers/__init__.py
ibidas/wrappers/cytoscape.py
ibidas/wrappers/fasta.py
ibidas/wrappers/matrix_tsv.py
ibidas/wrappers/psimi.py
ibidas/wrappers/python.py
ibidas/wrappers/sql.py
ibidas/wrappers/tsv.py
ibidas/wrappers/wrapper.py
ibidas/wrappers/wrapper_biomart.py
ibidas/wrappers/wrapper_chipchip.py
ibidas/wrappers/wrapper_hughes.py
ibidas/wrappers/wrapper_phospho.py
ibidas/wrappers/xml_wrapper.py
src/closure.c
src/closure.h
src/cutils.c
src/cutils.o
src/cutils.s
src/helper.h
src/multi_visitor.c
src/multi_visitor.h
src/build/lib.linux-i686-2.5/base_container.so
src/build/lib.linux-i686-2.5/closure.so
src/build/lib.linux-i686-2.5/itypes.so
src/build/lib.linux-i686-2.5/multi_visitor.so
src/build/lib.linux-i686-2.5/qgraph.so
src/build/lib.linux-i686-2.5/test.py
src/build/temp.linux-i686-2.5/base_container.o
src/build/temp.linux-i686-2.5/closure.o
src/build/temp.linux-i686-2.5/itypes.o
src/build/temp.linux-i686-2.5/multi_visitor.o
src/build/temp.linux-i686-2.5/qgraph.o
test/__init__.py
test/test_bugs.py
test/test_nested_array.py
test/test_tutorial.py