[31m/home/fjd29/Python/hyperspy3/doc/api/hyperspy.tests.drawing.rst:18: WARNING: autodoc: failed to import module 'hyperspy.tests.drawing.test_mpl_testing_setup'; the following exception was raised:
Traceback (most recent call last):
  File "/home/fjd29/anaconda3/lib/python3.6/site-packages/Sphinx-1.5.6-py3.6.egg/sphinx/ext/autodoc.py", line 560, in import_object
    __import__(self.modname)
  File "/home/fjd29/Python/hyperspy3/hyperspy/tests/drawing/test_mpl_testing_setup.py", line 37, in <module>
    @pytest.mark.skipif(not pytest.config.getvalue("mpl"),
AttributeError: module 'pytest' has no attribute 'config'
[39;49;00m[31m/home/fjd29/Python/hyperspy3/doc/user_guide/index.rst:10: WARNING: toctree contains reference to nonexisting document 'user_guide/samfire'
[39;49;00m[31m/home/fjd29/Python/hyperspy3/doc/user_guide/index.rst:10: WARNING: toctree contains reference to nonexisting document 'user_guide/credits'
[39;49;00m[31m/home/fjd29/Python/hyperspy3/doc/user_guide/io.rst:84: ERROR: Unknown directive type "load-multiple-label".

.. load-multiple-label::
[39;49;00m[31m/home/fjd29/Python/hyperspy3/doc/user_guide/io.rst:5: WARNING: Duplicate explicit target name: "open standard format".
[39;49;00m[31m/home/fjd29/Python/hyperspy3/doc/user_guide/io.rst:560: WARNING: Title underline too short.

Bruker composite file
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[39;49;00m[31m/home/fjd29/Python/hyperspy3/doc/user_guide/io.rst:560: WARNING: Title underline too short.

Bruker composite file
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[39;49;00m[31m/home/fjd29/Python/hyperspy3/doc/user_guide/examples/index.rst:: WARNING: document isn't included in any toctree
[39;49;00m[31m/home/fjd29/Python/hyperspy3/doc/user_guide/utils.rst:: WARNING: document isn't included in any toctree
[39;49;00m[31m/home/fjd29/Python/hyperspy3/doc/user_guide/io.rst:243: WARNING: more than one target found for cross-reference 'metadata': hyperspy.samfire.Samfire.metadata, hyperspy.io_plugins.semper_unf.SemperFormat.metadata
[39;49;00m[31m/home/fjd29/Python/hyperspy3/doc/user_guide/io.rst:245: WARNING: more than one target found for cross-reference 'metadata': hyperspy.samfire.Samfire.metadata, hyperspy.io_plugins.semper_unf.SemperFormat.metadata
[39;49;00m[31m/home/fjd29/Python/hyperspy3/doc/user_guide/io.rst:295: WARNING: undefined label: hdf5 (if the link has no caption the label must precede a section header)
[39;49;00m[31mWARNING: favicon file 'hyperspy_logo.ico' does not exist
[39;49;00m