WARNING: unsupported build info format in '/home/fjd29/Python/hyperspy3/doc/_build/html/.buildinfo', building all
/home/fjd29/Python/hyperspy3/hyperspy/component.py:docstring of hyperspy.component.Component.export:12: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/component.py:docstring of hyperspy.component.Component.export:19: WARNING: Definition list ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/signal.py:docstring of hyperspy.signal.BaseSignal.diff:4: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/signal.py:docstring of hyperspy.signal.BaseSignal.diff:5: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/signal.py:docstring of hyperspy.signal.BaseSignal.indexmax:15: SEVERE: Unexpected section title.

Usage
-----
/home/fjd29/Python/hyperspy3/hyperspy/signal.py:docstring of hyperspy.signal.BaseSignal.split:13: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/signal.py:docstring of hyperspy.signal.BaseSignal.valuemax:15: SEVERE: Unexpected section title.

Usage
-----
/home/fjd29/Python/hyperspy3/hyperspy/signal.py:docstring of hyperspy.signal.MVATools.export_bss_results:5: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/signal.py:docstring of hyperspy.signal.MVATools.export_bss_results:6: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/signal.py:docstring of hyperspy.signal.MVATools.export_bss_results:20: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/signal.py:docstring of hyperspy.signal.MVATools.export_bss_results:21: WARNING: Bullet list ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/signal.py:docstring of hyperspy.signal.MVATools.export_bss_results:25: WARNING: Definition list ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/signal.py:docstring of hyperspy.signal.MVATools.export_bss_results:26: WARNING: Bullet list ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/signal.py:docstring of hyperspy.signal.MVATools.export_bss_results:29: WARNING: Definition list ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/signal.py:docstring of hyperspy.signal.MVATools.export_decomposition_results:27: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/signal.py:docstring of hyperspy.signal.MVATools.export_decomposition_results:28: WARNING: Bullet list ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/signal.py:docstring of hyperspy.signal.MVATools.export_decomposition_results:32: WARNING: Definition list ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/signal.py:docstring of hyperspy.signal.MVATools.export_decomposition_results:33: WARNING: Bullet list ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/signal.py:docstring of hyperspy.signal.MVATools.export_decomposition_results:37: WARNING: Definition list ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/signal.py:docstring of hyperspy.signal.MVATools.export_decomposition_results:43: WARNING: Definition list ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/_components/eels_cl_edge.py:docstring of hyperspy._components.eels_cl_edge.EELSCLEdge:12: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/_components/volume_plasmon_drude.py:docstring of hyperspy._components.volume_plasmon_drude.VolumePlasmonDrude:9: ERROR: Malformed table.

+------------+-----------------+
| Parameter  |    Attribute    |
+------------+-----------------+
|    E_p     |  plasmon_energy |
+------------+-----------------+
| delta_E_p  |fwhm|
+------------+-----------------+
| intensity  |   intensity     |
+------------+-----------------+
/home/fjd29/Python/hyperspy3/hyperspy/_signals/dielectric_function.py:docstring of hyperspy._signals.dielectric_function.DielectricFunction.get_number_of_effective_electrons:7: WARNING: Definition list ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/_signals/dielectric_function.py:docstring of hyperspy._signals.dielectric_function.DielectricFunction.get_number_of_effective_electrons:9: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/_signals/dielectric_function.py:docstring of hyperspy._signals.dielectric_function.DielectricFunction.get_number_of_effective_electrons:11: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/_signals/dielectric_function.py:docstring of hyperspy._signals.dielectric_function.DielectricFunction.get_number_of_effective_electrons:15: SEVERE: Unexpected section title.

Parameters
----------
/home/fjd29/Python/hyperspy3/hyperspy/_signals/dielectric_function.py:docstring of hyperspy._signals.dielectric_function.DielectricFunction.get_number_of_effective_electrons:27: SEVERE: Unexpected section title.

Returns
-------
/home/fjd29/Python/hyperspy3/hyperspy/_signals/dielectric_function.py:docstring of hyperspy._signals.dielectric_function.DielectricFunction.get_number_of_effective_electrons:36: SEVERE: Unexpected section title.

Notes
-----
/home/fjd29/Python/hyperspy3/hyperspy/_signals/dielectric_function.py:docstring of hyperspy._signals.dielectric_function.DielectricFunction.get_number_of_effective_electrons:38: WARNING: Explicit markup ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/_signals/eds.py:docstring of hyperspy._signals.eds.EDSSpectrum.plot:5: WARNING: Bullet list ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/_signals/eels.py:docstring of hyperspy._signals.eels.EELSSpectrum.fourier_ratio_deconvolution:5: WARNING: Definition list ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/_signals/eels.py:docstring of hyperspy._signals.eels.EELSSpectrum.fourier_ratio_deconvolution:17: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/_signals/eels.py:docstring of hyperspy._signals.eels.EELSSpectrum.kramers_kronig_analysis:57: WARNING: Definition list ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/_signals/eels.py:docstring of hyperspy._signals.eels.EELSSpectrum.kramers_kronig_analysis:82: WARNING: Duplicate explicit target name: "egerton2011".
/home/fjd29/Python/hyperspy3/hyperspy/_signals/signal1d.py:docstring of hyperspy._signals.signal1d.Signal1DTools.calibrate:6: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/_signals/signal1d.py:docstring of hyperspy._signals.signal1d.Signal1DTools.calibrate:7: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/_signals/signal1d.py:docstring of hyperspy._signals.signal1d.Signal1DTools.remove_background:22: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/_signals/signal2d.py:docstring of hyperspy._signals.signal2d.Signal2DTools.align2D:26: WARNING: Inline interpreted text or phrase reference start-string without end-string.
/home/fjd29/Python/hyperspy3/hyperspy/_signals/signal2d.py:docstring of hyperspy._signals.signal2d.Signal2DTools.align2D:33: WARNING: Explicit markup ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/_signals/signal2d.py:docstring of hyperspy._signals.signal2d.Signal2DTools.crop_image:9: SEVERE: Unexpected section title.

See also:
---------
/home/fjd29/Python/hyperspy3/hyperspy/_signals/signal2d.py:docstring of hyperspy._signals.signal2d.Signal2DTools.estimate_shift2D:23: WARNING: Inline interpreted text or phrase reference start-string without end-string.
/home/fjd29/Python/hyperspy3/hyperspy/_signals/signal2d.py:docstring of hyperspy._signals.signal2d.Signal2DTools.estimate_shift2D:50: WARNING: Inline interpreted text or phrase reference start-string without end-string.
/home/fjd29/Python/hyperspy3/hyperspy/_signals/signal2d.py:docstring of hyperspy._signals.signal2d.Signal2DTools.estimate_shift2D:56: WARNING: Duplicate explicit target name: "1".
/home/fjd29/Python/hyperspy3/hyperspy/_signals/signal2d.py:docstring of hyperspy._signals.signal2d.Signal2DTools.estimate_shift2D:57: WARNING: Explicit markup ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/_signals/signal2d.py:docstring of hyperspy._signals.signal2d.Signal2DTools.align2D:26: ERROR: Duplicate target name, cannot be used as a unique reference: "1".
/home/fjd29/Python/hyperspy3/hyperspy/_signals/signal2d.py:docstring of hyperspy._signals.signal2d.Signal2DTools.estimate_shift2D:50: ERROR: Duplicate target name, cannot be used as a unique reference: "1".
/home/fjd29/Python/hyperspy3/hyperspy/_signals/dielectric_function.py:docstring of hyperspy._signals.dielectric_function.DielectricFunction.get_number_of_effective_electrons:37: WARNING: duplicate citation Egerton2011, other instance in /home/fjd29/Python/hyperspy3/doc/user_guide/bibliography.rst
/home/fjd29/Python/hyperspy3/hyperspy/_signals/eels.py:docstring of hyperspy._signals.eels.EELSSpectrum.kramers_kronig_analysis:82: WARNING: duplicate citation Egerton2011, other instance in /home/fjd29/Python/hyperspy3/doc/api/hyperspy._signals.rst
/home/fjd29/Python/hyperspy3/hyperspy/drawing/utils.py:docstring of hyperspy.drawing.utils.plot_images:71: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/drawing/utils.py:docstring of hyperspy.drawing.utils.plot_images:95: WARNING: Inline strong start-string without end-string.
/home/fjd29/Python/hyperspy3/hyperspy/external/tifffile.py:docstring of hyperspy.external.tifffile.TiffSequence:6: SEVERE: Unexpected section title.

Properties
----------
/home/fjd29/Python/hyperspy3/hyperspy/external/astroML/bayesian_blocks.py:docstring of hyperspy.external.astroML.bayesian_blocks.FitnessFunc:5: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/external/astroML/bayesian_blocks.py:docstring of hyperspy.external.astroML.bayesian_blocks.FitnessFunc:6: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/external/astroML/bayesian_blocks.py:docstring of hyperspy.external.astroML.bayesian_blocks.bayesian_blocks:66: WARNING: Duplicate explicit target name: "1".
/home/fjd29/Python/hyperspy3/hyperspy/external/astroML/histtools.py:docstring of hyperspy.external.astroML.histtools.knuth_bin_width:26: WARNING: Duplicate explicit target name: "1".
/home/fjd29/Python/hyperspy3/hyperspy/external/astroML/bayesian_blocks.py:docstring of hyperspy.external.astroML.bayesian_blocks:6: ERROR: Duplicate target name, cannot be used as a unique reference: "1".
/home/fjd29/Python/hyperspy3/hyperspy/external/astroML/bayesian_blocks.py:docstring of hyperspy.external.astroML.bayesian_blocks.bayesian_blocks:3: ERROR: Duplicate target name, cannot be used as a unique reference: "1".
/home/fjd29/Python/hyperspy3/hyperspy/external/astroML/histtools.py:docstring of hyperspy.external.astroML.histtools.knuth_bin_width:1: ERROR: Duplicate target name, cannot be used as a unique reference: "1".
/home/fjd29/Python/hyperspy3/hyperspy/external/mpfit/mpfit.py:docstring of hyperspy.external.mpfit.mpfit:4: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/external/mpfit/mpfit.py:docstring of hyperspy.external.mpfit.mpfit:9: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/external/mpfit/mpfit.py:docstring of hyperspy.external.mpfit.mpfit:12: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/external/mpfit/mpfit.py:docstring of hyperspy.external.mpfit.mpfit:132: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/external/mpfit/mpfit.py:docstring of hyperspy.external.mpfit.mpfit:142: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/external/mpfit/mpfit.py:docstring of hyperspy.external.mpfit.mpfit:144: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/external/mpfit/mpfit.py:docstring of hyperspy.external.mpfit.mpfit:145: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/external/mpfit/mpfit.py:docstring of hyperspy.external.mpfit.mpfit:147: WARNING: Definition list ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/external/mpfit/mpfit.py:docstring of hyperspy.external.mpfit.mpfit:222: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/external/mpfit/mpfit.py:docstring of hyperspy.external.mpfit.mpfit:264: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/external/mpfit/mpfit.py:docstring of hyperspy.external.mpfit.mpfit:265: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/external/mpfit/mpfit.py:docstring of hyperspy.external.mpfit.mpfit:284: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/external/mpfit/mpfit.py:docstring of hyperspy.external.mpfit.mpfit:285: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/external/mpfit/mpfit.py:docstring of hyperspy.external.mpfit.mpfit:305: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/external/mpfit/mpfit.py:docstring of hyperspy.external.mpfit.mpfit:390: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/external/mpfit/mpfit.py:docstring of hyperspy.external.mpfit.mpfit:391: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/external/mpfit/mpfit.py:docstring of hyperspy.external.mpfit.mpfit:399: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/external/mpfit/mpfitexpr.py:docstring of hyperspy.external.mpfit.mpfitexpr:0: ERROR: Error in "py:module" directive:
no content permitted.

.. py:module:: hyperspy.external.mpfit.mpfitexpr

    Copyright (C) 2009 Sergey Koposov
/home/fjd29/Python/hyperspy3/hyperspy/gui/tools.py:docstring of hyperspy.gui.tools.LineInSignal1D:5: SEVERE: Unexpected section title.

Attributes:
-----------
/home/fjd29/Python/hyperspy3/hyperspy/io_plugins/digital_micrograph.py:docstring of hyperspy.io_plugins.digital_micrograph.DigitalMicrographReader.read_string:3: WARNING: Definition list ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/io_plugins/ripple.py:docstring of hyperspy.io_plugins.ripple.file_reader:30: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/io_plugins/ripple.py:docstring of hyperspy.io_plugins.ripple.file_reader:31: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/io_plugins/ripple.py:docstring of hyperspy.io_plugins.ripple.write_raw:4: SEVERE: Unexpected section title.

Parameters:
-----------
/home/fjd29/Python/hyperspy3/hyperspy/learn/mva.py:docstring of hyperspy.learn.mva.LearningResults.load:3: WARNING: Definition list ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/learn/mva.py:docstring of hyperspy.learn.mva.LearningResults.save:5: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/learn/mva.py:docstring of hyperspy.learn.mva.LearningResults.save:6: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/misc/material.py:docstring of hyperspy.misc.material.density_of_mixture_of_pure_elements:25: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/misc/material.py:docstring of hyperspy.misc.material.density_of_mixture_of_pure_elements:26: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/misc/utils.py:docstring of hyperspy.misc.utils.swapelem:8: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/misc/eels/tools.py:docstring of hyperspy.misc.eels.tools.eels_constant:7: WARNING: Definition list ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/misc/eels/tools.py:docstring of hyperspy.misc.eels.tools.eels_constant:9: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/misc/eels/tools.py:docstring of hyperspy.misc.eels.tools.eels_constant:10: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/misc/eels/tools.py:docstring of hyperspy.misc.eels.tools.eels_constant:13: ERROR: Unexpected indentation.
/home/fjd29/Python/hyperspy3/hyperspy/misc/eels/tools.py:docstring of hyperspy.misc.eels.tools.eels_constant:14: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/fjd29/Python/hyperspy3/hyperspy/misc/eels/tools.py:docstring of hyperspy.misc.eels.tools.eels_constant:18: SEVERE: Unexpected section title.

Parameters
----------
/home/fjd29/Python/hyperspy3/hyperspy/misc/eels/tools.py:docstring of hyperspy.misc.eels.tools.eels_constant:34: SEVERE: Unexpected section title.

Returns
-------
/home/fjd29/Python/hyperspy3/doc/index.rst:7: WARNING: Title underline too short.

Welcome to HyperSpy's documentation!
===================================
/home/fjd29/Python/hyperspy3/doc/user_guide/bibliography.rst:7: WARNING: duplicate citation Egerton2011, other instance in /home/fjd29/Python/hyperspy3/doc/api/hyperspy._signals.rst
/home/fjd29/Python/hyperspy3/doc/user_guide/eds.rst:4: WARNING: Title underline too short.

Energy-Dispersive X-Rays Spectrometry (EDS)
******************************************
/home/fjd29/Python/hyperspy3/doc/user_guide/eels.rst:242: ERROR: Figure caption must be a paragraph or empty comment.

.. figure::  images/curve_fitting_BN.png
   :align:   center
   :width:   500

   Curve fitting quantification of a boron nitride EELS core-loss spectrum from
   `The EELS Data Base
   <http://pc-web.cemes.fr/eelsdb/index.php?page=home.php>`_
/home/fjd29/Python/hyperspy3/doc/user_guide/getting_started.rst:2: WARNING: Duplicate explicit target name: "ipython".
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(see the transcript file for additional information)
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Transcript written on math.log.

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