.gitattributes
.gitignore
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CONTRIBUTION.md
LICENSE
README.md
makefile
pyproject.toml
setup.py
.github/workflows/build_docs.yaml
.github/workflows/pypi_push.yaml
.github/workflows/pytest.yaml
benchmarks/batch_generation.py
benchmarks/inner_nodes_est_R.ipynb
benchmarks/phylmean.py
benchmarks/phylogenetic_mean.ipynb
docs/Makefile
docs/make.bat
docs/requirements.txt
docs/figures/hyperiax_logo.png
docs/figures/hyperiax_logo_small.png
docs/source/conf.py
docs/source/hyperiax.execution.rst
docs/source/hyperiax.mcmc.rst
docs/source/hyperiax.models.functional.rst
docs/source/hyperiax.models.prebuilts.rst
docs/source/hyperiax.models.rst
docs/source/hyperiax.rst
docs/source/hyperiax.tree.rst
docs/source/index.rst
docs/source/usage.rst
docs/source/generated/tree.rst
docs/source/notebooks/Upwards_LDDMM.ipynb
docs/source/notebooks/mcmc_Gaussian_BFFG.ipynb
docs/source/notebooks/mean_estimation.ipynb
docs/source/notebooks/tree_building.ipynb
examples/Tree building.ipynb
examples/Upwards_LDDMM.ipynb
examples/fast.ipynb
examples/localfast.ipynb
examples/mcmc_Gaussian_BFFG.ipynb
examples/mean_estimation.ipynb
hyperiax/__init__.py
hyperiax/_version.py
hyperiax.egg-info/PKG-INFO
hyperiax.egg-info/SOURCES.txt
hyperiax.egg-info/dependency_links.txt
hyperiax.egg-info/requires.txt
hyperiax.egg-info/top_level.txt
hyperiax/execution/__init__.py
hyperiax/execution/fastexecutor.py
hyperiax/execution/unorderedexecutor.py
hyperiax/mcmc/__init__.py
hyperiax/mcmc/fixedparameter.py
hyperiax/mcmc/metropolis_hastings.py
hyperiax/mcmc/parameter.py
hyperiax/mcmc/parameterstore.py
hyperiax/mcmc/plotting.py
hyperiax/mcmc/varianceParameter.py
hyperiax/models/__init__.py
hyperiax/models/basemodel.py
hyperiax/models/lambdamodels.py
hyperiax/models/updatemodel.py
hyperiax/models/updownmodel.py
hyperiax/models/utils.py
hyperiax/models/functional/__init__.py
hyperiax/models/functional/reducers.py
hyperiax/models/functional/shortup.py
hyperiax/models/prebuilts/__init__.py
hyperiax/models/prebuilts/mean_estimation.py
hyperiax/plotting/__init__.py
hyperiax/plotting/ascii.py
hyperiax/plotting/scatter.py
hyperiax/plotting/tree_plots.py
hyperiax/tree/__init__.py
hyperiax/tree/plot_utils.py
hyperiax/tree/printer_utils.py
hyperiax/tree/topology.py
hyperiax/tree/tree.py
hyperiax/tree/updaters.py
tests/builders_test.py
tests/executors_test.py
tests/test_fixtures.py