MANIFEST.in
README.md
setup.py
cli/__init__.py
cli/_version.py
cli/dictionary.py
cli/folder.py
cli/ok.py
cli/plugins.py
cli/toollist.py
cli/utils.py
cli/plugins/cal.py
cli/plugins/cc.py
cli/plugins/git.py
huik_module.egg-info/PKG-INFO
huik_module.egg-info/SOURCES.txt
huik_module.egg-info/dependency_links.txt
huik_module.egg-info/entry_points.txt
huik_module.egg-info/requires.txt
huik_module.egg-info/top_level.txt
mymodule/__init__.py
mymodule/align.py
mymodule/mypath.py
mymodule/rotate_logger.py
mymodule/seq.py
mymodule/tool.py
mymodule/NUPACK/_NUPACK.py
mymodule/NUPACK/__init__.py
mymodule/NUPACK/nupack3.0.6/bin/.exist
mymodule/NUPACK/nupack3.0.6/bin/complexes
mymodule/NUPACK/nupack3.0.6/bin/concentrations
mymodule/NUPACK/nupack3.0.6/bin/count
mymodule/NUPACK/nupack3.0.6/bin/defect
mymodule/NUPACK/nupack3.0.6/bin/design
mymodule/NUPACK/nupack3.0.6/bin/distributions
mymodule/NUPACK/nupack3.0.6/bin/energy
mymodule/NUPACK/nupack3.0.6/bin/mfe
mymodule/NUPACK/nupack3.0.6/bin/pairs
mymodule/NUPACK/nupack3.0.6/bin/pfunc
mymodule/NUPACK/nupack3.0.6/bin/prob
mymodule/NUPACK/nupack3.0.6/bin/sample
mymodule/NUPACK/nupack3.0.6/bin/subopt
mymodule/NUPACK/nupack3.0.6/lib/.exist
mymodule/NUPACK/nupack3.0.6/lib/Makefile
mymodule/NUPACK/nupack3.0.6/lib/libdesign_pfunc_utils.a
mymodule/NUPACK/nupack3.0.6/lib/libmt19937.a
mymodule/NUPACK/nupack3.0.6/lib/libpfunc.a
mymodule/NUPACK/nupack3.0.6/lib/libutils.a
mymodule/NUPACK/nupack3.0.6/parameters/dna1998.dG
mymodule/NUPACK/nupack3.0.6/parameters/dna1998.dH
mymodule/NUPACK/nupack3.0.6/parameters/rna1995.dG
mymodule/NUPACK/nupack3.0.6/parameters/rna1995.dH
mymodule/NUPACK/nupack3.0.6/parameters/rna1999.dG
mymodule/RNAstructure/Error_handling.py
mymodule/RNAstructure/RNAstructure_wrap.py
mymodule/RNAstructure/_RNAstructure.py
mymodule/RNAstructure/_RNAstructure_wrap.so
mymodule/RNAstructure/__init__.py
mymodule/RNAstructure/readme.txt
mymodule/RNAstructure/data_tables/autodetect.txt
mymodule/RNAstructure/data_tables/average_ensemble_defect.model
mymodule/RNAstructure/data_tables/b-test.coaxial.dg
mymodule/RNAstructure/data_tables/b-test.coaxial.dh
mymodule/RNAstructure/data_tables/b-test.coaxstack.dg
mymodule/RNAstructure/data_tables/b-test.coaxstack.dh
mymodule/RNAstructure/data_tables/b-test.dangle.dg
mymodule/RNAstructure/data_tables/b-test.dangle.dh
mymodule/RNAstructure/data_tables/b-test.dynalignmiscloop.dg
mymodule/RNAstructure/data_tables/b-test.hexaloop.dg
mymodule/RNAstructure/data_tables/b-test.hexaloop.dh
mymodule/RNAstructure/data_tables/b-test.int11.dg
mymodule/RNAstructure/data_tables/b-test.int11.dh
mymodule/RNAstructure/data_tables/b-test.int21.dg
mymodule/RNAstructure/data_tables/b-test.int21.dh
mymodule/RNAstructure/data_tables/b-test.int22.dg
mymodule/RNAstructure/data_tables/b-test.int22.dh
mymodule/RNAstructure/data_tables/b-test.loop.dg
mymodule/RNAstructure/data_tables/b-test.miscloop.dg
mymodule/RNAstructure/data_tables/b-test.specification.dat
mymodule/RNAstructure/data_tables/b-test.stack.dg
mymodule/RNAstructure/data_tables/b-test.stack.dh
mymodule/RNAstructure/data_tables/b-test.tloop.dg
mymodule/RNAstructure/data_tables/b-test.tloop.dh
mymodule/RNAstructure/data_tables/b-test.triloop.dg
mymodule/RNAstructure/data_tables/b-test.triloop.dh
mymodule/RNAstructure/data_tables/b-test.tstack.dg
mymodule/RNAstructure/data_tables/b-test.tstack.dh
mymodule/RNAstructure/data_tables/b-test.tstackcoax.dg
mymodule/RNAstructure/data_tables/b-test.tstackcoax.dh
mymodule/RNAstructure/data_tables/b-test.tstackh.dg
mymodule/RNAstructure/data_tables/b-test.tstackh.dh
mymodule/RNAstructure/data_tables/b-test.tstacki.dg
mymodule/RNAstructure/data_tables/b-test.tstacki.dh
mymodule/RNAstructure/data_tables/b-test.tstacki1n.dg
mymodule/RNAstructure/data_tables/b-test.tstacki1n.dh
mymodule/RNAstructure/data_tables/b-test.tstacki23.dg
mymodule/RNAstructure/data_tables/b-test.tstacki23.dh
mymodule/RNAstructure/data_tables/b-test.tstackm.dg
mymodule/RNAstructure/data_tables/b-test.tstackm.dh
mymodule/RNAstructure/data_tables/coaxial.dat
mymodule/RNAstructure/data_tables/coaxial.dh
mymodule/RNAstructure/data_tables/coaxstack.dat
mymodule/RNAstructure/data_tables/coaxstack.dh
mymodule/RNAstructure/data_tables/dangle.dat
mymodule/RNAstructure/data_tables/dangle.dh
mymodule/RNAstructure/data_tables/data_assemble_training_Multifind_predict_ensemble_z_final_svmformat.model
mymodule/RNAstructure/data_tables/description.txt
mymodule/RNAstructure/data_tables/design.DNA.Helices.dat
mymodule/RNAstructure/data_tables/design.DNA.Loops.dat
mymodule/RNAstructure/data_tables/design.RNA.Helices.dat
mymodule/RNAstructure/data_tables/design.RNA.Loops.dat
mymodule/RNAstructure/data_tables/dna.coaxial.dg
mymodule/RNAstructure/data_tables/dna.coaxial.dh
mymodule/RNAstructure/data_tables/dna.coaxstack.dg
mymodule/RNAstructure/data_tables/dna.coaxstack.dh
mymodule/RNAstructure/data_tables/dna.dangle.dg
mymodule/RNAstructure/data_tables/dna.dangle.dh
mymodule/RNAstructure/data_tables/dna.dynalignmiscloop.dg
mymodule/RNAstructure/data_tables/dna.dynalignmiscloop.dh
mymodule/RNAstructure/data_tables/dna.hexaloop.dg
mymodule/RNAstructure/data_tables/dna.hexaloop.dh
mymodule/RNAstructure/data_tables/dna.int11.dg
mymodule/RNAstructure/data_tables/dna.int11.dh
mymodule/RNAstructure/data_tables/dna.int21.dg
mymodule/RNAstructure/data_tables/dna.int21.dh
mymodule/RNAstructure/data_tables/dna.int22.dg
mymodule/RNAstructure/data_tables/dna.int22.dh
mymodule/RNAstructure/data_tables/dna.loop.dg
mymodule/RNAstructure/data_tables/dna.loop.dh
mymodule/RNAstructure/data_tables/dna.miscloop.dg
mymodule/RNAstructure/data_tables/dna.miscloop.dh
mymodule/RNAstructure/data_tables/dna.specification.dat
mymodule/RNAstructure/data_tables/dna.stack.dg
mymodule/RNAstructure/data_tables/dna.stack.dh
mymodule/RNAstructure/data_tables/dna.tloop.dg
mymodule/RNAstructure/data_tables/dna.tloop.dh
mymodule/RNAstructure/data_tables/dna.triloop.dg
mymodule/RNAstructure/data_tables/dna.triloop.dh
mymodule/RNAstructure/data_tables/dna.tstack.dg
mymodule/RNAstructure/data_tables/dna.tstack.dh
mymodule/RNAstructure/data_tables/dna.tstackcoax.dg
mymodule/RNAstructure/data_tables/dna.tstackcoax.dh
mymodule/RNAstructure/data_tables/dna.tstackh.dg
mymodule/RNAstructure/data_tables/dna.tstackh.dh
mymodule/RNAstructure/data_tables/dna.tstacki.dg
mymodule/RNAstructure/data_tables/dna.tstacki.dh
mymodule/RNAstructure/data_tables/dna.tstacki1n.dg
mymodule/RNAstructure/data_tables/dna.tstacki1n.dh
mymodule/RNAstructure/data_tables/dna.tstacki23.dg
mymodule/RNAstructure/data_tables/dna.tstacki23.dh
mymodule/RNAstructure/data_tables/dna.tstackm.dg
mymodule/RNAstructure/data_tables/dna.tstackm.dh
mymodule/RNAstructure/data_tables/dnacoaxial.dat
mymodule/RNAstructure/data_tables/dnacoaxial.dh
mymodule/RNAstructure/data_tables/dnacoaxstack.dat
mymodule/RNAstructure/data_tables/dnacoaxstack.dh
mymodule/RNAstructure/data_tables/dnadangle.dat
mymodule/RNAstructure/data_tables/dnadangle.dh
mymodule/RNAstructure/data_tables/dnadynalignmiscloop.dat
mymodule/RNAstructure/data_tables/dnadynalignmiscloop.dh
mymodule/RNAstructure/data_tables/dnahexaloop.dat
mymodule/RNAstructure/data_tables/dnahexaloop.dh
mymodule/RNAstructure/data_tables/dnaint11.dat
mymodule/RNAstructure/data_tables/dnaint11.dh
mymodule/RNAstructure/data_tables/dnaint21.dat
mymodule/RNAstructure/data_tables/dnaint21.dh
mymodule/RNAstructure/data_tables/dnaint22.dat
mymodule/RNAstructure/data_tables/dnaint22.dh
mymodule/RNAstructure/data_tables/dnaloop.dat
mymodule/RNAstructure/data_tables/dnaloop.dh
mymodule/RNAstructure/data_tables/dnamiscloop.dat
mymodule/RNAstructure/data_tables/dnamiscloop.dh
mymodule/RNAstructure/data_tables/dnastack.dat
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mymodule/RNAstructure/data_tables/dnatloop.dat
mymodule/RNAstructure/data_tables/dnatloop.dh
mymodule/RNAstructure/data_tables/dnatriloop.dat
mymodule/RNAstructure/data_tables/dnatriloop.dh
mymodule/RNAstructure/data_tables/dnatstack.dat
mymodule/RNAstructure/data_tables/dnatstack.dh
mymodule/RNAstructure/data_tables/dnatstackcoax.dat
mymodule/RNAstructure/data_tables/dnatstackcoax.dh
mymodule/RNAstructure/data_tables/dnatstackh.dat
mymodule/RNAstructure/data_tables/dnatstackh.dh
mymodule/RNAstructure/data_tables/dnatstacki.dat
mymodule/RNAstructure/data_tables/dnatstacki.dh
mymodule/RNAstructure/data_tables/dnatstacki1n.dat
mymodule/RNAstructure/data_tables/dnatstacki1n.dh
mymodule/RNAstructure/data_tables/dnatstacki23.dat
mymodule/RNAstructure/data_tables/dnatstacki23.dh
mymodule/RNAstructure/data_tables/dnatstackm.dat
mymodule/RNAstructure/data_tables/dnatstackm.dh
mymodule/RNAstructure/data_tables/dynalignmiscloop.dat
mymodule/RNAstructure/data_tables/fam_hmm_pars.dat
mymodule/RNAstructure/data_tables/helix.dat
mymodule/RNAstructure/data_tables/helixdr.dat
mymodule/RNAstructure/data_tables/hexaloop.dat
mymodule/RNAstructure/data_tables/hexaloop.dh
mymodule/RNAstructure/data_tables/int11.dat
mymodule/RNAstructure/data_tables/int11.dh
mymodule/RNAstructure/data_tables/int21.dat
mymodule/RNAstructure/data_tables/int21.dh
mymodule/RNAstructure/data_tables/int22-exp.dh
mymodule/RNAstructure/data_tables/int22.dat
mymodule/RNAstructure/data_tables/int22.dh
mymodule/RNAstructure/data_tables/loop.dat
mymodule/RNAstructure/data_tables/loop.dh
mymodule/RNAstructure/data_tables/miscloop.dat
mymodule/RNAstructure/data_tables/miscloop.dh
mymodule/RNAstructure/data_tables/new_training_z_ave.scale.model
mymodule/RNAstructure/data_tables/new_training_z_std.scale.model
mymodule/RNAstructure/data_tables/pseudconst.dat
mymodule/RNAstructure/data_tables/rna.coaxial.dg
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mymodule/RNAstructure/data_tables/rna.cov.dg
mymodule/RNAstructure/data_tables/rna.cov.dh
mymodule/RNAstructure/data_tables/rna.dangle.dg
mymodule/RNAstructure/data_tables/rna.dangle.dh
mymodule/RNAstructure/data_tables/rna.dynalignmiscloop.dg
mymodule/RNAstructure/data_tables/rna.hexaloop.dg
mymodule/RNAstructure/data_tables/rna.hexaloop.dh
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mymodule/RNAstructure/data_tables/rna.int21.dg
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mymodule/RNAstructure/data_tables/rna.int22.dg
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mymodule/RNAstructure/data_tables/rna.loop.dg
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mymodule/RNAstructure/data_tables/rna.miscloop.dg
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mymodule/RNAstructure/data_tables/rna.param_map.dg
mymodule/RNAstructure/data_tables/rna.specification.dat
mymodule/RNAstructure/data_tables/rna.stack.dg
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mymodule/RNAstructure/data_tables/rna.tloop.dg
mymodule/RNAstructure/data_tables/rna.tloop.dh
mymodule/RNAstructure/data_tables/rna.triloop.dg
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mymodule/RNAstructure/data_tables/rna.tstack.dg
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mymodule/RNAstructure/data_tables/rna.tstackcoax.dg
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mymodule/RNAstructure/data_tables/rna.tstackh.dh
mymodule/RNAstructure/data_tables/rna.tstacki.dg
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mymodule/RNAstructure/data_tables/rna.tstacki1n.dg
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mymodule/RNAstructure/data_tables/rna.tstacki23.dg
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mymodule/RNAstructure/data_tables/rna.tstackm.dg
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mymodule/RNAstructure/data_tables/stack.dat
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mymodule/RNAstructure/data_tables/stack.ds
mymodule/RNAstructure/data_tables/stackdr.dat
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mymodule/RNAstructure/data_tables/std_ensemble_defect.model
mymodule/RNAstructure/data_tables/tloop.dat
mymodule/RNAstructure/data_tables/tloop.dh
mymodule/RNAstructure/data_tables/triloop.dat
mymodule/RNAstructure/data_tables/triloop.dh
mymodule/RNAstructure/data_tables/tstack.dat
mymodule/RNAstructure/data_tables/tstack.dh
mymodule/RNAstructure/data_tables/tstackcoax.dat
mymodule/RNAstructure/data_tables/tstackcoax.dh
mymodule/RNAstructure/data_tables/tstackh.dat
mymodule/RNAstructure/data_tables/tstackh.dh
mymodule/RNAstructure/data_tables/tstacki.dat
mymodule/RNAstructure/data_tables/tstacki.dh
mymodule/RNAstructure/data_tables/tstacki1n.dat
mymodule/RNAstructure/data_tables/tstacki1n.dh
mymodule/RNAstructure/data_tables/tstacki23.dat
mymodule/RNAstructure/data_tables/tstacki23.dh
mymodule/RNAstructure/data_tables/tstackm.dat
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mymodule/RNAstructure/data_tables/dists/CMCTdist.txt
mymodule/RNAstructure/data_tables/dists/DMSdist.txt
mymodule/RNAstructure/data_tables/dists/SHAPEdist.txt
mymodule/RNAstructure/data_tables/rsample/paired_end.txt
mymodule/RNAstructure/data_tables/rsample/paired_mid.txt
mymodule/RNAstructure/data_tables/rsample/unpaired.txt
mymodule/ViennaRNA/_RNA.so
mymodule/ViennaRNA/__init__.py