AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
docs/Makefile
docs/api.rst
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/history.rst
docs/index_stage1.rst
docs/index_stage2.rst
docs/indices.rst
docs/_templates/autosummary/class.rst
docs/_templates/autosummary/exception.rst
docs/_templates/autosummary/function.rst
docs/_templates/autosummary/module.rst
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hstrat/__init__.py
hstrat.egg-info/PKG-INFO
hstrat.egg-info/SOURCES.txt
hstrat.egg-info/dependency_links.txt
hstrat.egg-info/requires.txt
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hstrat/genome_instrumentation/_HereditaryStratum.py
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hstrat/juxtaposition/_calc_ranks_since_last_retained_commonality_with.py
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hstrat/stratum_retention_strategy/stratum_retention_algorithms/__init__.py
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tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_policy_evaluators/test_MrcaUncertaintyRelUpperBoundEvaluator.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_policy_evaluators/test_NumStrataRetainedExactEvaluator.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_policy_evaluators/test_NumStrataRetainedUpperBoundEvaluator.py
tests/test_hstrat/test_stratum_retention_viz/__init__.py
tests/test_hstrat/test_stratum_retention_viz/conftest.py
tests/test_hstrat/test_stratum_retention_viz/test_animate/__init__.py
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tests/test_hstrat/test_stratum_retention_viz/test_plot/__init__.py
tests/test_hstrat/test_stratum_retention_viz/test_plot/test_mrca_uncertainty_absolute_barplot.py
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tests/test_hstrat/test_stratum_retention_viz/test_plot/test_stratum_retention_dripplot.py
tests/test_hstrat/test_test_drive/__init__.py
tests/test_hstrat/test_test_drive/test_DecantingPhyloTracker.py
tests/test_hstrat/test_test_drive/test_GarbageCollectingPhyloTracker.py
tests/test_hstrat/test_test_drive/test_descend_template_phylogeny.py
tests/test_hstrat/test_test_drive/test_descend_template_phylogeny_alifestd.py
tests/test_hstrat/test_test_drive/test_descend_template_phylogeny_biopython.py
tests/test_hstrat/test_test_drive/test_descend_template_phylogeny_dendropy.py
tests/test_hstrat/test_test_drive/test_descend_template_phylogeny_naive.py
tests/test_hstrat/test_test_drive/test_descend_template_phylogeny_networkx.py
tests/test_hstrat/test_test_drive/test_descend_template_phylogeny_posthoc.py
tests/test_hstrat/test_test_drive/test_evolve_fitness_trait_population.py
tests/test_hstrat/test_test_drive/test_perfect_tracking.py
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