from estimators import (
    estimate_rank_of_mrca_maximum_likelihood,
    estimate_rank_of_mrca_naive,
    estimate_rank_of_mrca_unbiased,
)
from pairwise import (
    ballpark_patristic_distance_between,
    ballpark_rank_of_mrca_between,
    ballpark_ranks_since_mrca_with,
    calc_patristic_distance_bounds_between,
    calc_rank_of_earliest_detectable_mrca_between,
    calc_rank_of_mrca_bounds_between,
    calc_rank_of_mrca_bounds_provided_confidence_level,
    calc_rank_of_mrca_uncertainty_between,
    calc_ranks_since_earliest_detectable_mrca_with,
    calc_ranks_since_mrca_bounds_provided_confidence_level,
    calc_ranks_since_mrca_bounds_with,
    calc_ranks_since_mrca_uncertainty_with,
    does_definitively_have_no_common_ancestor,
    does_have_any_common_ancestor,
    estimate_patristic_distance_between,
    estimate_rank_of_mrca_between,
    estimate_ranks_since_mrca_with,
)
from population import (
    build_distance_matrix_biopython,
    build_distance_matrix_numpy,
    calc_rank_of_earliest_detectable_mrca_among,
    calc_rank_of_mrca_bounds_among,
    calc_rank_of_mrca_uncertainty_among,
    does_definitively_share_no_common_ancestor,
    does_share_any_common_ancestor,
)
from priors import (
    ArbitraryPrior,
    ExponentialPrior,
    GeometricPrior,
    UniformPrior,
)
from tree import (
    AssignDestructionTimeYoungestPlusOneTriePostprocessor,
    AssignOriginTimeExpectedValueTriePostprocessor,
    AssignOriginTimeNaiveTriePostprocessor,
    AssignOriginTimeNodeRankTriePostprocessor,
    AssignOriginTimeSampleNaiveTriePostprocessor,
    CompoundTriePostprocessor,
    PeelBackConjoinedLeavesTriePostprocessor,
    SampleAncestralRollbacksTriePostprocessor,
    build_tree,
    build_tree_nj,
    build_tree_searchtable,
    build_tree_trie,
    build_tree_trie_ensemble,
    build_tree_upgma,
    trie_postprocess,
)

from . import estimators, pairwise, population, priors, tree

__all__ = [
    "estimators",
    "pairwise",
    "population",
    "priors",
    "tree",
    "estimate_rank_of_mrca_maximum_likelihood",
    "estimate_rank_of_mrca_naive",
    "estimate_rank_of_mrca_unbiased",
    "ballpark_patristic_distance_between",
    "ballpark_rank_of_mrca_between",
    "ballpark_ranks_since_mrca_with",
    "calc_patristic_distance_bounds_between",
    "calc_rank_of_earliest_detectable_mrca_between",
    "calc_rank_of_mrca_bounds_between",
    "calc_rank_of_mrca_bounds_provided_confidence_level",
    "calc_rank_of_mrca_uncertainty_between",
    "calc_ranks_since_earliest_detectable_mrca_with",
    "calc_ranks_since_mrca_bounds_with",
    "calc_ranks_since_mrca_bounds_provided_confidence_level",
    "calc_ranks_since_mrca_uncertainty_with",
    "does_definitively_have_no_common_ancestor",
    "does_have_any_common_ancestor",
    "estimate_patristic_distance_between",
    "estimate_rank_of_mrca_between",
    "estimate_ranks_since_mrca_with",
    "build_distance_matrix_biopython",
    "build_distance_matrix_numpy",
    "calc_rank_of_earliest_detectable_mrca_among",
    "calc_rank_of_mrca_bounds_among",
    "calc_rank_of_mrca_uncertainty_among",
    "does_definitively_share_no_common_ancestor",
    "does_share_any_common_ancestor",
    "ArbitraryPrior",
    "GeometricPrior",
    "ExponentialPrior",
    "UniformPrior",
    "build_tree_nj",
    "build_tree_searchtable",
    "build_tree_trie",
    "build_tree_trie_ensemble",
    "build_tree_upgma",
    "build_tree",
    "trie_postprocess",
    "AssignDestructionTimeYoungestPlusOneTriePostprocessor",
    "AssignOriginTimeExpectedValueTriePostprocessor",
    "AssignOriginTimeNaiveTriePostprocessor",
    "AssignOriginTimeNodeRankTriePostprocessor",
    "AssignOriginTimeSampleNaiveTriePostprocessor",
    "CompoundTriePostprocessor",
    "PeelBackConjoinedLeavesTriePostprocessor",
    "SampleAncestralRollbacksTriePostprocessor",
]
