# This file was autogenerated by uv via the following command:
#    uv pip compile --python-version=3.11 ../../pyproject.toml --extra testing --extra jit -o requirements-testing.txt
alifedata-phyloinformatics-convert==0.17.0
    # via hstrat (../../pyproject.toml)
annotated-types==0.7.0
    # via pydantic
anytree==2.12.1
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
biopython==1.84
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
bitarray==3.0.0
    # via hstrat (../../pyproject.toml)
bitstring==4.0.2
    # via hstrat (../../pyproject.toml)
click==8.1.7
    # via
    #   alifedata-phyloinformatics-convert
    #   keyname
contexttimer==0.3.3
    # via hstrat (../../pyproject.toml)
contourpy==1.3.1
    # via matplotlib
coverage==6.4.4
    # via hstrat (../../pyproject.toml)
cppimport==22.8.2
    # via hstrat (../../pyproject.toml)
cycler==0.12.1
    # via matplotlib
dendropy==5.0.1
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
deprecated==1.2.15
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
distlib==0.3.9
    # via virtualenv
downstream==1.4.0
    # via hstrat (../../pyproject.toml)
entrypoints==0.3
    # via flake8
ete3==3.1.3
    # via alifedata-phyloinformatics-convert
execnet==2.1.1
    # via pytest-xdist
filelock==3.16.1
    # via
    #   cppimport
    #   tox
    #   virtualenv
flake8==3.7.8
    # via hstrat (../../pyproject.toml)
fonttools==4.55.0
    # via matplotlib
idna==3.10
    # via yarl
iniconfig==2.0.0
    # via pytest
interval-search==0.5.2
    # via hstrat (../../pyproject.toml)
iterify==0.1.0
    # via hstrat (../../pyproject.toml)
iterpop==0.4.1
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
joinem==0.9.1
    # via
    #   hstrat (../../pyproject.toml)
    #   downstream
keyname==0.4.1
    # via
    #   hstrat (../../pyproject.toml)
    #   teeplot
kiwisolver==1.4.7
    # via matplotlib
lazy-loader==0.4
    # via
    #   hstrat (../../pyproject.toml)
    #   downstream
llvmlite==0.43.0
    # via numba
lru-dict==1.3.0
    # via hstrat (../../pyproject.toml)
mako==1.3.6
    # via cppimport
markupsafe==3.0.2
    # via mako
matplotlib==3.9.2
    # via
    #   hstrat (../../pyproject.toml)
    #   seaborn
    #   teeplot
mccabe==0.6.1
    # via flake8
mmh3==5.0.1
    # via hstrat (../../pyproject.toml)
more-itertools==8.13.0
    # via hstrat (../../pyproject.toml)
mpmath==1.3.0
    # via hstrat (../../pyproject.toml)
multidict==6.1.0
    # via yarl
multimethod==1.12
    # via pandera
mypy==0.991
    # via hstrat (../../pyproject.toml)
mypy-extensions==1.0.0
    # via
    #   mypy
    #   typing-inspect
nanto==0.1.1
    # via alifedata-phyloinformatics-convert
networkx==3.4.2
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
numba==0.60.0
    # via hstrat (../../pyproject.toml)
numpy==2.0.2
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
    #   biopython
    #   contourpy
    #   downstream
    #   matplotlib
    #   numba
    #   pandas
    #   pandera
    #   patsy
    #   scipy
    #   seaborn
    #   statsmodels
    #   teeplot
opytional==0.1.0
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
    #   downstream
ordered-set==4.1.0
    # via hstrat (../../pyproject.toml)
packaging==24.2
    # via
    #   hstrat (../../pyproject.toml)
    #   lazy-loader
    #   matplotlib
    #   pandera
    #   pytest
    #   statsmodels
    #   tox
pandas==2.2.3
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
    #   pandera
    #   seaborn
    #   statsmodels
    #   teeplot
pandera==0.21.0
    # via hstrat (../../pyproject.toml)
patsy==1.0.1
    # via statsmodels
phylotrackpy==0.2.4
    # via hstrat (../../pyproject.toml)
pillow==11.0.0
    # via matplotlib
platformdirs==4.3.6
    # via virtualenv
pluggy==1.5.0
    # via
    #   pytest
    #   tox
polars==1.16.0
    # via
    #   hstrat (../../pyproject.toml)
    #   downstream
    #   joinem
prettytable==3.12.0
    # via hstrat (../../pyproject.toml)
propcache==0.2.0
    # via yarl
py==1.11.0
    # via
    #   pytest-forked
    #   tox
pyarrow==18.1.0
    # via polars
pybind11==2.13.6
    # via cppimport
pycodestyle==2.5.0
    # via flake8
pydantic==2.10.2
    # via pandera
pydantic-core==2.27.1
    # via pydantic
pyflakes==2.1.1
    # via flake8
pyparsing==3.2.0
    # via matplotlib
pytest==8.3.3
    # via
    #   hstrat (../../pyproject.toml)
    #   pytest-forked
    #   pytest-xdist
pytest-forked==1.6.0
    # via pytest-xdist
pytest-xdist==2.5.0
    # via hstrat (../../pyproject.toml)
python-dateutil==2.9.0.post0
    # via
    #   matplotlib
    #   pandas
python-slugify==8.0.4
    # via
    #   hstrat (../../pyproject.toml)
    #   teeplot
pytz==2024.2
    # via pandas
pyyaml==6.0.1
    # via hstrat (../../pyproject.toml)
ruff==0.1.11
    # via hstrat (../../pyproject.toml)
safe-assert==0.2.0
    # via hstrat (../../pyproject.toml)
scipy==1.14.1
    # via
    #   hstrat (../../pyproject.toml)
    #   statsmodels
seaborn==0.13.2
    # via hstrat (../../pyproject.toml)
setuptools==75.6.0
    # via dendropy
six==1.16.0
    # via
    #   anytree
    #   python-dateutil
    #   tox
sortedcontainers==2.4.0
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
statsmodels==0.14.4
    # via hstrat (../../pyproject.toml)
teeplot==0.4.0
    # via hstrat (../../pyproject.toml)
text-unidecode==1.3
    # via python-slugify
toml==0.10.2
    # via tox
tox==3.24.0
    # via hstrat (../../pyproject.toml)
tqdist==1.0
    # via hstrat (../../pyproject.toml)
tqdm==4.67.1
    # via
    #   hstrat (../../pyproject.toml)
    #   joinem
typeguard==4.4.1
    # via pandera
typing-extensions==4.12.2
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
    #   mypy
    #   pydantic
    #   pydantic-core
    #   typeguard
    #   typing-inspect
typing-inspect==0.9.0
    # via pandera
tzdata==2024.2
    # via pandas
validators==0.34.0
    # via alifedata-phyloinformatics-convert
virtualenv==20.28.0
    # via tox
wcwidth==0.2.13
    # via prettytable
wrapt==1.17.0
    # via
    #   deprecated
    #   pandera
yarl==1.18.0
    # via alifedata-phyloinformatics-convert
