# This file was autogenerated by uv via the following command:
#    uv pip compile --python-version=3.8 ../../pyproject.toml --extra pinned_dependencies_py38 --extra pinned_jit --extra testing_py38 -o requirements-testing.txt
alifedata-phyloinformatics-convert>=0.16.4
    # via hstrat (../../pyproject.toml)
annotated-types>=0.7.0
    # via pydantic
anytree>=2.8.0
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
attrs>=24.2.0
    # via pytest
biopython>=1.79
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
bitarray>=2.6.2
    # via hstrat (../../pyproject.toml)
bitstring>=3.1.9
    # via hstrat (../../pyproject.toml)
click>=8.1.7
    # via
    #   alifedata-phyloinformatics-convert
    #   keyname
contexttimer>=0.3.3
    # via hstrat (../../pyproject.toml)
coverage>=6.4.4
    # via hstrat (../../pyproject.toml)
cycler>=0.12.1
    # via matplotlib
dendropy>=4.5.2
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
deprecated>=1.2.13
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
distlib>=0.3.9
    # via virtualenv
entrypoints>=0.3
    # via flake8
ete3>=3.1.3
    # via alifedata-phyloinformatics-convert
execnet>=2.1.1
    # via pytest-xdist
filelock>=3.16.1
    # via
    #   tox
    #   virtualenv
flake8>=3.7.8
    # via hstrat (../../pyproject.toml)
fonttools>=4.54.1
    # via matplotlib
idna>=3.10
    # via yarl
importlib-metadata>=8.5.0
    # via numba
iniconfig>=2.0.0
    # via pytest
interval-search>=0.3.1
    # via hstrat (../../pyproject.toml)
iterify>=0.1.0
    # via hstrat (../../pyproject.toml)
iterpop>=0.4.1
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
keyname>=0.4.1
    # via
    #   hstrat (../../pyproject.toml)
    #   teeplot
kiwisolver>=1.4.7
    # via matplotlib
lazy-loader>=0.4
    # via hstrat (../../pyproject.toml)
llvmlite>=0.39.1
    # via numba
lru-dict>=1.1.8
    # via hstrat (../../pyproject.toml)
matplotlib>=3.5.2
    # via
    #   hstrat (../../pyproject.toml)
    #   seaborn
    #   teeplot
mccabe>=0.6.1
    # via flake8
mmh3>=3.0.0
    # via hstrat (../../pyproject.toml)
more-itertools>=8.13.0
    # via hstrat (../../pyproject.toml)
mpmath>=1.2.1
    # via hstrat (../../pyproject.toml)
multidict>=6.1.0
    # via yarl
mypy>=0.991
    # via hstrat (../../pyproject.toml)
mypy-extensions>=1.0.0
    # via
    #   mypy
    #   typing-inspect
nanto>=0.1.1
    # via alifedata-phyloinformatics-convert
networkx>=2.6.3
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
numba>=0.56.4
    # via hstrat (../../pyproject.toml)
numpy<2,>=1.21.6
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
    #   biopython
    #   matplotlib
    #   numba
    #   pandas
    #   pandera
    #   patsy
    #   scipy
    #   seaborn
    #   statsmodels
    #   teeplot
opytional>=0.1.0
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
ordered-set>=4.1.0
    # via hstrat (../../pyproject.toml)
packaging>=23.0
    # via
    #   hstrat (../../pyproject.toml)
    #   lazy-loader
    #   matplotlib
    #   pandera
    #   pytest
    #   statsmodels
    #   tox
pandas<2,>=1.3.5
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
    #   pandera
    #   seaborn
    #   statsmodels
    #   teeplot
pandera>=0.13.4
    # via hstrat (../../pyproject.toml)
patsy>=0.5.6
    # via statsmodels
phylotrackpy>=0.2.2
    # via alifedata-phyloinformatics-convert
pillow>=10.4.0
    # via matplotlib
platformdirs>=4.3.6
    # via virtualenv
pluggy>=1.5.0
    # via
    #   pytest
    #   tox
prettytable>=3.5.0
    # via hstrat (../../pyproject.toml)
propcache>=0.2.0
    # via yarl
py>=1.11.0
    # via
    #   pytest
    #   pytest-forked
    #   tox
pycodestyle>=2.5.0
    # via flake8
pydantic>=2.9.2
    # via pandera
pydantic-core>=2.23.4
    # via pydantic
pyflakes>=2.1.1
    # via flake8
pyparsing>=3.1.4
    # via matplotlib
pytest>=7.1.2
    # via
    #   hstrat (../../pyproject.toml)
    #   pytest-forked
    #   pytest-xdist
pytest-forked>=1.6.0
    # via pytest-xdist
pytest-xdist>=2.5.0
    # via hstrat (../../pyproject.toml)
python-dateutil>=2.9.0.post0
    # via
    #   matplotlib
    #   pandas
python-slugify>=6.1.2
    # via
    #   hstrat (../../pyproject.toml)
    #   teeplot
pytz>=2024.2
    # via pandas
pyyaml>=6.0.1
    # via hstrat (../../pyproject.toml)
ruff>=0.1.11
    # via hstrat (../../pyproject.toml)
safe-assert>=0.2.0
    # via hstrat (../../pyproject.toml)
scipy>=1.7.3
    # via
    #   hstrat (../../pyproject.toml)
    #   seaborn
    #   statsmodels
seaborn>=0.11.0
    # via hstrat (../../pyproject.toml)
setuptools>=75.3.0
    # via
    #   hstrat (../../pyproject.toml)
    #   dendropy
    #   numba
six>=1.16.0
    # via
    #   anytree
    #   patsy
    #   python-dateutil
    #   tox
sortedcontainers>=2.4.0
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
statsmodels>=0.14.1
    # via hstrat (../../pyproject.toml)
teeplot>=0.4.0
    # via hstrat (../../pyproject.toml)
text-unidecode>=1.3
    # via python-slugify
toml>=0.10.2
    # via tox
tomli>=2.0.2
    # via
    #   mypy
    #   pytest
tox>=3.24.0
    # via hstrat (../../pyproject.toml)
tqdist>=1.0
    # via hstrat (../../pyproject.toml)
tqdm>=4.62.3
    # via hstrat (../../pyproject.toml)
typing-extensions>=4.12.2
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
    #   annotated-types
    #   multidict
    #   mypy
    #   pydantic
    #   pydantic-core
    #   typing-inspect
typing-inspect>=0.9.0
    # via pandera
validators>=0.34.0
    # via alifedata-phyloinformatics-convert
virtualenv>=20.27.1
    # via tox
wcwidth>=0.2.13
    # via prettytable
wrapt>=1.16.0
    # via
    #   deprecated
    #   pandera
yarl>=1.15.2
    # via alifedata-phyloinformatics-convert
zipp>=3.20.2
    # via importlib-metadata
