LICENSE
README.md
pyproject.toml
src/hotspot3/__init__.py
src/hotspot3/__main__.py
src/hotspot3/cli.py
src/hotspot3/config.py
src/hotspot3/extract_pvals.py
src/hotspot3/from_configs.py
src/hotspot3/multiple_sample_fdr.py
src/hotspot3/processors.py
src/hotspot3/track_memory.py
src/hotspot3.egg-info/PKG-INFO
src/hotspot3.egg-info/SOURCES.txt
src/hotspot3.egg-info/dependency_links.txt
src/hotspot3.egg-info/entry_points.txt
src/hotspot3.egg-info/requires.txt
src/hotspot3.egg-info/top_level.txt
src/hotspot3/background_fit/__init__.py
src/hotspot3/background_fit/defunc.py
src/hotspot3/background_fit/fit.py
src/hotspot3/background_fit/genomic_background_fit.py
src/hotspot3/background_fit/regression.py
src/hotspot3/connectors/__init__.py
src/hotspot3/connectors/babachi.py
src/hotspot3/connectors/bam2bed.py
src/hotspot3/connectors/bottleneck.py
src/hotspot3/helpers/__init__.py
src/hotspot3/helpers/colors.py
src/hotspot3/helpers/format_converters.py
src/hotspot3/helpers/models.py
src/hotspot3/helpers/stats.py
src/hotspot3/helpers/utils.py
src/hotspot3/io/__init__.py
src/hotspot3/io/logging.py
src/hotspot3/io/paths.py
src/hotspot3/io/readers.py
src/hotspot3/io/writers.py
src/hotspot3/peak_calling/__init__.py
src/hotspot3/peak_calling/peak_calling.py
src/hotspot3/scoring/__init__.py
src/hotspot3/scoring/fdr.py
src/hotspot3/scoring/pvalue.py
src/hotspot3/scripts/__init__.py
src/hotspot3/scripts/extract_cutcounts.sh
src/hotspot3/signal_smoothing/__init__.py
src/hotspot3/signal_smoothing/modwt.py