LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
data/est_072022_emissions.pkl
data/est_072022_transitions.pkl
src/GMM_stats/GMM_stats.py
src/GMM_stats/GMM_stats_v1.py
src/GMM_stats/__init__.py
src/HMMSTR/HMMSTR.py
src/HMMSTR/HMMSTR_v1.py
src/HMMSTR/__init__.py
src/HMMSTR.egg-info/PKG-INFO
src/HMMSTR.egg-info/SOURCES.txt
src/HMMSTR.egg-info/dependency_links.txt
src/HMMSTR.egg-info/entry_points.txt
src/HMMSTR.egg-info/not-zip-safe
src/HMMSTR.egg-info/requires.txt
src/HMMSTR.egg-info/top_level.txt
src/HMMSTR_utils/HMMSTR_utils.py
src/HMMSTR_utils/HMMSTR_utils_v1.py
src/HMMSTR_utils/__init__.py
src/KDE_stats/KDE_stats.py
src/KDE_stats/__init__.py
src/c_files/__init__.pxd
src/c_files/__init__.pyx
src/c_files/hmm.c
src/c_files/hmm.h
src/c_files/hmm.pxd
src/c_files/hmm.pyx
src/c_files/hmmrand.c
src/c_files/hmmutils.c
src/c_files/nrutil.c
src/c_files/nrutil.h
src/c_files/sequence.c
src/c_files/test_hmm_cython.py
src/c_files/testvit.c
src/c_files/viterbi.c
src/process_read/__init__.py
src/process_read/process_read.py
src/process_vit_res/__init__.py
src/process_vit_res/process_vit_res.py
src/profile_HMM/__init__.py
src/profile_HMM/profile_HMM.py
src/profile_HMM/data/est_072022_emissions.pkl
src/profile_HMM/data/est_072022_transitions.pkl