.gitignore
LICENSE
README.md
pyproject.toml
hits/__init__.py
hits/adapters.py
hits/adapters_cython.pyx
hits/annotation.py
hits/bus.py
hits/cloning.py
hits/external_sort.py
hits/fasta.py
hits/fastq.py
hits/fastq_cython.pyx
hits/genetic_code.py
hits/genomes.py
hits/gff.py
hits/intensities_illumina.py
hits/interval.py
hits/ipython.py
hits/mapping_tools.py
hits/paired_end.py
hits/restriction.py
hits/sam.py
hits/sw.py
hits/sw_cython.pyx
hits/utilities.py
hits/variants.py
hits/visualize_structure.py
hits.egg-info/PKG-INFO
hits.egg-info/SOURCES.txt
hits.egg-info/dependency_links.txt
hits.egg-info/requires.txt
hits.egg-info/top_level.txt
hits/parallel/.gitignore
hits/parallel/__init__.py
hits/parallel/launcher.py
hits/parallel/map_reduce.py
hits/parallel/split_file.py
hits/parallel/split_sra_file.py
hits/serialize/__init__.py
hits/serialize/array_1d.py
hits/serialize/array_2d.py
hits/serialize/array_3d.py
hits/serialize/counts.py
hits/serialize/log.py
hits/serialize/mismatches.py
hits/serialize/ref_positions.py
hits/serialize/sparse_joint_counts.py
hits/serialize/timing.py
hits/test/test_sam.py
hits/test/test_split.py
hits/visualize/__init__.py
hits/visualize/callback.py
hits/visualize/define_igv_colors.py
hits/visualize/fastq.py
hits/visualize/gels.py
hits/visualize/interactive/__init__.py
hits/visualize/interactive/example_df.txt
hits/visualize/interactive/heatmap_range.coffee
hits/visualize/interactive/heatmap_range.js
hits/visualize/interactive/heatmap_search.coffee
hits/visualize/interactive/heatmap_search.js
hits/visualize/interactive/jan_ratios.csv
hits/visualize/interactive/pc.py
hits/visualize/interactive/pc_box_select.coffee
hits/visualize/interactive/pc_box_select.js
hits/visualize/interactive/pc_clear.coffee
hits/visualize/interactive/pc_clear.js
hits/visualize/interactive/pc_hover.coffee
hits/visualize/interactive/pc_hover.js
hits/visualize/interactive/pc_search.coffee
hits/visualize/interactive/pc_search.js
hits/visualize/interactive/pc_selection.coffee
hits/visualize/interactive/pc_selection.js
hits/visualize/interactive/scatter_alpha.coffee
hits/visualize/interactive/scatter_alpha.js
hits/visualize/interactive/scatter_annotation_button.coffee
hits/visualize/interactive/scatter_annotation_button.js
hits/visualize/interactive/scatter_case_sensitive.coffee
hits/visualize/interactive/scatter_case_sensitive.js
hits/visualize/interactive/scatter_cluster_button.coffee
hits/visualize/interactive/scatter_cluster_button.js
hits/visualize/interactive/scatter_color.coffee
hits/visualize/interactive/scatter_color.js
hits/visualize/interactive/scatter_grid.coffee
hits/visualize/interactive/scatter_grid.js
hits/visualize/interactive/scatter_heatmap.coffee
hits/visualize/interactive/scatter_heatmap.js
hits/visualize/interactive/scatter_label.coffee
hits/visualize/interactive/scatter_label.js
hits/visualize/interactive/scatter_label_button.coffee
hits/visualize/interactive/scatter_label_button.js
hits/visualize/interactive/scatter_menu.coffee
hits/visualize/interactive/scatter_menu.js
hits/visualize/interactive/scatter_range.coffee
hits/visualize/interactive/scatter_range.js
hits/visualize/interactive/scatter_save_button.coffee
hits/visualize/interactive/scatter_save_button.js
hits/visualize/interactive/scatter_search.coffee
hits/visualize/interactive/scatter_search.js
hits/visualize/interactive/scatter_selection.coffee
hits/visualize/interactive/scatter_selection.js
hits/visualize/interactive/scatter_size_menu.coffee
hits/visualize/interactive/scatter_size_menu.js
hits/visualize/interactive/scatter_subset_menu.coffee
hits/visualize/interactive/scatter_subset_menu.js
hits/visualize/interactive/scatter_two_level_menu.coffee
hits/visualize/interactive/scatter_two_level_menu.js
hits/visualize/interactive/scatter_zoom_to_data.coffee
hits/visualize/interactive/scatter_zoom_to_data.js
hits/visualize/interactive/template_inline.html