LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
versioneer.py
historydag/__init__.py
historydag/_version.py
historydag/beast_loader.py
historydag/compact_genome.py
historydag/counterops.py
historydag/dag.py
historydag/dag_node.py
historydag/dag_pb2.py
historydag/likelihoods.py
historydag/mutation_annotated_dag.py
historydag/parsimony.py
historydag/parsimony_utils.py
historydag/sankoff_cli.py
historydag/sequence_dag.py
historydag/utils.py
historydag.egg-info/PKG-INFO
historydag.egg-info/SOURCES.txt
historydag.egg-info/dependency_links.txt
historydag.egg-info/requires.txt
historydag.egg-info/top_level.txt
tests/test_collapse.py
tests/test_compact_genome.py
tests/test_dag_sankoff.py
tests/test_disambiguate.py
tests/test_edgeset.py
tests/test_factory.py
tests/test_historydag.py
tests/test_mutation_annotated_dag.py
tests/test_node_insert.py
tests/test_subclass_conversion.py
tests/test_support.py
tests/test_utils.py