.editorconfig
.git-blame-ignore-revs
.gitignore
.pre-commit-config.yaml
LICENSE
MANIFEST.in
NOTICE
README.rst
codecov.yml
pyproject.toml
requirements-dev.txt
ruff.toml
setup.cfg
setup.py
tox.ini
.circleci/config.yml
docs/config_options.rst
docs/controls.rst
docs/slicer_cli_plugins.rst
docs/images/difference.gif
docs/images/intersect.gif
docs/images/union.gif
docs/images/xor.gif
histomicsui/__init__.py
histomicsui/constants.py
histomicsui/handlers.py
histomicsui/webroot.mako
histomicsui.egg-info/PKG-INFO
histomicsui.egg-info/SOURCES.txt
histomicsui.egg-info/dependency_links.txt
histomicsui.egg-info/entry_points.txt
histomicsui.egg-info/not-zip-safe
histomicsui.egg-info/requires.txt
histomicsui.egg-info/top_level.txt
histomicsui/models/__init__.py
histomicsui/models/aperio.py
histomicsui/models/case.py
histomicsui/models/cohort.py
histomicsui/models/image.py
histomicsui/models/meta.py
histomicsui/models/pathology.py
histomicsui/models/slide.py
histomicsui/rest/__init__.py
histomicsui/rest/aperio.py
histomicsui/rest/hui_resource.py
histomicsui/rest/image_browse_resource.py
histomicsui/rest/system.py
histomicsui/rest/tcga.py
histomicsui/web_client/app.js
histomicsui/web_client/events.js
histomicsui/web_client/index.js
histomicsui/web_client/main.js
histomicsui/web_client/package.json
histomicsui/web_client/router.js
histomicsui/web_client/routes.js
histomicsui/web_client/webpack.helper.js
histomicsui/web_client/collections/StyleCollection.js
histomicsui/web_client/collections/UserCollection.js
histomicsui/web_client/collections/index.js
histomicsui/web_client/dialogs/confirmDialog.js
histomicsui/web_client/dialogs/editElement.js
histomicsui/web_client/dialogs/editRegionOfInterest.js
histomicsui/web_client/dialogs/editStyleGroups.js
histomicsui/web_client/dialogs/index.js
histomicsui/web_client/dialogs/metadataPlot.js
histomicsui/web_client/dialogs/openAnnotatedImage.js
histomicsui/web_client/dialogs/openImage.js
histomicsui/web_client/dialogs/saveAnnotation.js
histomicsui/web_client/models/StyleModel.js
histomicsui/web_client/models/index.js
histomicsui/web_client/panels/AnnotationSelector.js
histomicsui/web_client/panels/DrawWidget.js
histomicsui/web_client/panels/FrameSelectorWidget.js
histomicsui/web_client/panels/MetadataPlot.js
histomicsui/web_client/panels/MetadataWidget.js
histomicsui/web_client/panels/OverviewWidget.js
histomicsui/web_client/panels/RegionSelector.js
histomicsui/web_client/panels/ZoomWidget.js
histomicsui/web_client/panels/index.js
histomicsui/web_client/static/favicon.png
histomicsui/web_client/stylesheets/body/configView.styl
histomicsui/web_client/stylesheets/body/image.styl
histomicsui/web_client/stylesheets/dialogs/editStyleGroups.styl
histomicsui/web_client/stylesheets/dialogs/metadataPlot.styl
histomicsui/web_client/stylesheets/dialogs/openAnnotatedImage.styl
histomicsui/web_client/stylesheets/dialogs/saveAnnotation.styl
histomicsui/web_client/stylesheets/layout/header.styl
histomicsui/web_client/stylesheets/layout/headerAnalyses.styl
histomicsui/web_client/stylesheets/layout/headerImage.styl
histomicsui/web_client/stylesheets/layout/layout.styl
histomicsui/web_client/stylesheets/panels/annotationSelector.styl
histomicsui/web_client/stylesheets/panels/drawWidget.styl
histomicsui/web_client/stylesheets/panels/frameSelectorWidget.styl
histomicsui/web_client/stylesheets/panels/metadataPlot.styl
histomicsui/web_client/stylesheets/panels/metadataWidget.styl
histomicsui/web_client/stylesheets/panels/overviewWidget.styl
histomicsui/web_client/stylesheets/panels/regionSelector.styl
histomicsui/web_client/stylesheets/panels/zoomWidget.styl
histomicsui/web_client/stylesheets/popover/annotationContextMenu.styl
histomicsui/web_client/stylesheets/popover/annotationPopover.styl
histomicsui/web_client/stylesheets/views/itemList.styl
histomicsui/web_client/stylesheets/views/searchResultsView.styl
histomicsui/web_client/templates/body/configView.pug
histomicsui/web_client/templates/body/image.pug
histomicsui/web_client/templates/dialogs/annotatedImageList.pug
histomicsui/web_client/templates/dialogs/confirmDialog.pug
histomicsui/web_client/templates/dialogs/editElement.pug
histomicsui/web_client/templates/dialogs/editRegionOfInterest.pug
histomicsui/web_client/templates/dialogs/editStyleGroups.pug
histomicsui/web_client/templates/dialogs/metadataPlot.pug
histomicsui/web_client/templates/dialogs/openAnnotatedImage.pug
histomicsui/web_client/templates/dialogs/openImage.pug
histomicsui/web_client/templates/dialogs/saveAnnotation.pug
histomicsui/web_client/templates/layout/header.pug
histomicsui/web_client/templates/layout/headerAnalyses.pug
histomicsui/web_client/templates/layout/headerImage.pug
histomicsui/web_client/templates/layout/headerUser.pug
histomicsui/web_client/templates/layout/layout.pug
histomicsui/web_client/templates/panels/annotationSelector.pug
histomicsui/web_client/templates/panels/drawWidget.pug
histomicsui/web_client/templates/panels/drawWidgetElement.pug
histomicsui/web_client/templates/panels/frameSelectorWidget.pug
histomicsui/web_client/templates/panels/metadataPlot.pug
histomicsui/web_client/templates/panels/metadataWidgetPanel.pug
histomicsui/web_client/templates/panels/overviewWidget.pug
histomicsui/web_client/templates/panels/panel.pug
histomicsui/web_client/templates/panels/regionSelector.pug
histomicsui/web_client/templates/panels/zoomWidget.pug
histomicsui/web_client/templates/popover/annotationContextMenu.pug
histomicsui/web_client/templates/popover/annotationPopover.pug
histomicsui/web_client/templates/popover/annotationPopoverMetadata.pug
histomicsui/web_client/templates/popover/pixelmapContextMenu.pug
histomicsui/web_client/views/HierarchyWidget.js
histomicsui/web_client/views/JobDetailsWidget.js
histomicsui/web_client/views/View.js
histomicsui/web_client/views/index.js
histomicsui/web_client/views/itemList.js
histomicsui/web_client/views/itemPage.js
histomicsui/web_client/views/searchResultsView.js
histomicsui/web_client/views/utils.js
histomicsui/web_client/views/body/ConfigView.js
histomicsui/web_client/views/body/ImageView.js
histomicsui/web_client/views/body/index.js
histomicsui/web_client/views/layout/HeaderAnalysesView.js
histomicsui/web_client/views/layout/HeaderImageView.js
histomicsui/web_client/views/layout/HeaderUserView.js
histomicsui/web_client/views/layout/HeaderView.js
histomicsui/web_client/views/layout/LoginView.js
histomicsui/web_client/views/layout/index.js
histomicsui/web_client/views/popover/AnnotationContextMenu.js
histomicsui/web_client/views/popover/AnnotationPopover.js
histomicsui/web_client/views/popover/PixelmapContextMenu.js
histomicsui/web_client/views/popover/index.js
histomicsui/web_client/vue/components/ColorPickerInput.vue
histomicsui/web_client/vue/components/EditHeatmapOrGridData.vue
histomicsui/web_client/vue/components/EditHeatmapOrGridDataContainer.vue
tests/__init__.py
tests/datastore.py
tests/girder_utilities.py
tests/test_handlers.py
tests/test_hui_rest.py
tests/test_image_browse_endpoints.py
tests/test_load.py
tests/test_tcga.py
tests/test_web_client.py
tests/test_files/.histomicsui_config.yaml
tests/test_files/sample.anot
tests/test_files/sample.meta
tests/test_files/sample_girder_id.anot
tests/test_files/test_analysis_detection.xml
tests/test_files/test_analysis_features.xml
tests/web_client_specs/.eslintrc
tests/web_client_specs/analysisSpec.js
tests/web_client_specs/annotationSpec.js
tests/web_client_specs/girderUISpec.js
tests/web_client_specs/huiSpec.js
tests/web_client_specs/huiTest.js
tests/web_client_specs/itemSpec.js
tests/web_client_specs/metadataPanelSpec.js
tests/web_client_specs/metadataPlotSpec.js
tests/web_client_specs/overviewPanelSpec.js
tests/web_client_specs/panelLayoutSpec.js
tests/web_client_specs/pixelmapCategorySpec.js