Authors.rst
LICENSE.txt
MANIFEST.in
NEWS
setup.cfg
setup.py
hichipper/.DS_Store
hichipper/.Rhistory
hichipper/__init__.py
hichipper/__init__.pyc
hichipper/cli.py
hichipper/cli.pyc
hichipper/diffloop_work.R
hichipper/interactionsCall.sh
hichipper/qcReport.R
hichipper/qcReport_make.Rmd
hichipper/requirementsInstall.R
hichipper/resFragAnchorProcess.R
hichipper.egg-info/PKG-INFO
hichipper.egg-info/SOURCES.txt
hichipper.egg-info/dependency_links.txt
hichipper.egg-info/entry_points.txt
hichipper.egg-info/not-zip-safe
hichipper.egg-info/requires.txt
hichipper.egg-info/top_level.txt
tests/.DS_Store
tests/__init__.py
tests/__init__.pyc
tests/test_cli.py
tests/chipseq/GM12878_SMC3_ChIPSeq_chr22.narrowPeak
tests/correct_output/.DS_Store
tests/correct_output/goal.loop_counts.bedpe
tests/hicpro/.DS_Store
tests/hicpro/bowtie_results/.DS_Store
tests/hicpro/bowtie_results/bwt2/.DS_Store
tests/hicpro/bowtie_results/bwt2/dSRR3467177/dSRR3467177_hg19.bwt2pairs.pairstat
tests/hicpro/bowtie_results/bwt2/dSRR3467178/dSRR3467178_hg19.bwt2pairs.pairstat
tests/hicpro/hic_results/.DS_Store
tests/hicpro/hic_results/data/.DS_Store
tests/hicpro/hic_results/data/dSRR3467177/dSRR3467177_hg19.bwt2pairs.RSstat
tests/hicpro/hic_results/data/dSRR3467177/dSRR3467177_hg19_chr22.bwt2pairs.DEPairs
tests/hicpro/hic_results/data/dSRR3467177/dSRR3467177_hg19_chr22.bwt2pairs.DumpPairs
tests/hicpro/hic_results/data/dSRR3467177/dSRR3467177_hg19_chr22.bwt2pairs.SCPairs
tests/hicpro/hic_results/data/dSRR3467177/dSRR3467177_hg19_chr22.bwt2pairs.SinglePairs
tests/hicpro/hic_results/data/dSRR3467177/dSRR3467177_hg19_chr22.bwt2pairs.validPairs
tests/hicpro/hic_results/data/dSRR3467178/.DS_Store
tests/hicpro/hic_results/data/dSRR3467178/dSRR3467178_hg19.bwt2pairs.RSstat
tests/hicpro/hic_results/data/dSRR3467178/dSRR3467178_hg19_chr22.bwt2pairs.DEPairs
tests/hicpro/hic_results/data/dSRR3467178/dSRR3467178_hg19_chr22.bwt2pairs.DumpPairs
tests/hicpro/hic_results/data/dSRR3467178/dSRR3467178_hg19_chr22.bwt2pairs.SCPairs
tests/hicpro/hic_results/data/dSRR3467178/dSRR3467178_hg19_chr22.bwt2pairs.SinglePairs
tests/hicpro/hic_results/data/dSRR3467178/dSRR3467178_hg19_chr22.bwt2pairs.validPairs
tests/hicpro_one/.DS_Store
tests/hicpro_one/bowtie_results/.DS_Store
tests/hicpro_one/bowtie_results/bwt2/.DS_Store
tests/hicpro_one/bowtie_results/bwt2/dSRR3467177/dSRR3467177_hg19.bwt2pairs.pairstat
tests/hicpro_one/hic_results/.DS_Store
tests/hicpro_one/hic_results/data/.DS_Store
tests/hicpro_one/hic_results/data/dSRR3467177/dSRR3467177_hg19.bwt2pairs.RSstat
tests/hicpro_one/hic_results/data/dSRR3467177/dSRR3467177_hg19_chr22.bwt2pairs.DEPairs
tests/hicpro_one/hic_results/data/dSRR3467177/dSRR3467177_hg19_chr22.bwt2pairs.DumpPairs
tests/hicpro_one/hic_results/data/dSRR3467177/dSRR3467177_hg19_chr22.bwt2pairs.SCPairs
tests/hicpro_one/hic_results/data/dSRR3467177/dSRR3467177_hg19_chr22.bwt2pairs.SinglePairs
tests/hicpro_one/hic_results/data/dSRR3467177/dSRR3467177_hg19_chr22.bwt2pairs.validPairs
tests/resfrag/hg19_MboI_resfrag_chr22.bed.gz
tests/yaml/example_ALL.yaml
tests/yaml/example_EACH.yaml
tests/yaml/one.yaml
tests/yaml/two.yaml