README.md
setup.py
src/health_cpath/configs/run_ids.py
src/health_cpath/configs/classification/BaseMIL.py
src/health_cpath/configs/classification/DeepSMILECrck.py
src/health_cpath/configs/classification/DeepSMILEPanda.py
src/health_cpath/configs/classification/DeepSMILESlidesPandaBenchmark.py
src/health_cpath/datamodules/base_module.py
src/health_cpath/datamodules/panda_module.py
src/health_cpath/datamodules/panda_module_benchmark.py
src/health_cpath/datamodules/tcga_crck_module.py
src/health_cpath/datasets/base_dataset.py
src/health_cpath/datasets/dataset_return_index.py
src/health_cpath/datasets/default_paths.py
src/health_cpath/datasets/panda_dataset.py
src/health_cpath/datasets/panda_tiles_dataset.py
src/health_cpath/datasets/tcga_crck_tiles_dataset.py
src/health_cpath/datasets/tcga_prad_dataset.py
src/health_cpath/models/deepmil.py
src/health_cpath/models/encoders.py
src/health_cpath/models/transforms.py
src/health_cpath/preprocessing/create_panda_tiles_dataset.py
src/health_cpath/preprocessing/create_tiles_dataset.py
src/health_cpath/preprocessing/loading.py
src/health_cpath/preprocessing/tiff_conversion.py
src/health_cpath/preprocessing/tiling.py
src/health_cpath/scripts/aggregate_metrics_crossvalidation.py
src/health_cpath/scripts/create_montage.py
src/health_cpath/scripts/generate_checkpoint_url.py
src/health_cpath/scripts/generate_crossval_report.py
src/health_cpath/scripts/mount_azure_dataset.py
src/health_cpath/scripts/tcga_dataset_prep.py
src/health_cpath/utils/__init__.py
src/health_cpath/utils/analysis_plot_utils.py
src/health_cpath/utils/callbacks.py
src/health_cpath/utils/deepmil_utils.py
src/health_cpath/utils/download_utils.py
src/health_cpath/utils/girder.py
src/health_cpath/utils/heatmap_utils.py
src/health_cpath/utils/layer_utils.py
src/health_cpath/utils/montage.py
src/health_cpath/utils/montage_config.py
src/health_cpath/utils/naming.py
src/health_cpath/utils/output_utils.py
src/health_cpath/utils/package_setup.py
src/health_cpath/utils/plots_utils.py
src/health_cpath/utils/report_utils.py
src/health_cpath/utils/tcga_utils.py
src/health_cpath/utils/tiff_conversion_config.py
src/health_cpath/utils/tiles_selection_utils.py
src/health_cpath/utils/viz_utils.py
src/health_cpath/utils/wsi_utils.py
src/hi_ml_cpath.egg-info/PKG-INFO
src/hi_ml_cpath.egg-info/SOURCES.txt
src/hi_ml_cpath.egg-info/dependency_links.txt
src/hi_ml_cpath.egg-info/requires.txt
src/hi_ml_cpath.egg-info/top_level.txt