.gitignore
.travis.yml
LICENSE
README.md
setup.py
documentation/clustering.md
documentation/detection.md
documentation/biocam/BioCam-demo.md
documentation/biocam/output_10_1.png
documentation/biocam/output_15_0.png
documentation/biocam/output_16_1.png
documentation/biocam/output_17_0.png
documentation/biocam/output_5_1.png
documentation/biocam/output_9_2.png
documentation/pictures/spikes.png
herdingspikes/__init__.py
herdingspikes/hs2.py
herdingspikes/parameter_optimisation.py
herdingspikes/probe.py
herdingspikes.egg-info/PKG-INFO
herdingspikes.egg-info/SOURCES.txt
herdingspikes.egg-info/dependency_links.txt
herdingspikes.egg-info/not-zip-safe
herdingspikes.egg-info/requires.txt
herdingspikes.egg-info/top_level.txt
herdingspikes/../README.md
herdingspikes/clustering/__init__.py
herdingspikes/clustering/mean_shift_.py
herdingspikes/detection_localisation/FilterSpikes.cpp
herdingspikes/detection_localisation/FilterSpikes.h
herdingspikes/detection_localisation/LocalizeSpikes.cpp
herdingspikes/detection_localisation/LocalizeSpikes.h
herdingspikes/detection_localisation/Parameters.h
herdingspikes/detection_localisation/ProcessSpikes.cpp
herdingspikes/detection_localisation/ProcessSpikes.h
herdingspikes/detection_localisation/SpikeHandler.cpp
herdingspikes/detection_localisation/SpikeHandler.h
herdingspikes/detection_localisation/SpkDonline.cpp
herdingspikes/detection_localisation/SpkDonline.h
herdingspikes/detection_localisation/__init__.py
herdingspikes/detection_localisation/detect.cpp
herdingspikes/detection_localisation/detect.pyx
herdingspikes/detection_localisation/detect3.5.cpp
herdingspikes/detection_localisation/detect3.6.cpp
herdingspikes/probe_functions/__init__.py
herdingspikes/probe_functions/generate_pos_neigh_rectang_probe.py
herdingspikes/probe_functions/neighborMatrixUtils.py
herdingspikes/probe_functions/readUtils.py
herdingspikes/probe_info/neighbormatrix_SiNAPS_S1
herdingspikes/probe_info/neighbormatrix_biocam
herdingspikes/probe_info/neighbormatrix_hierlemann_visapy_emulation
herdingspikes/probe_info/neighbormatrix_mcs120
herdingspikes/probe_info/neighbormatrix_mea1k
herdingspikes/probe_info/neighbormatrix_neuropixel
herdingspikes/probe_info/neighbormatrix_neuroseeker_128
herdingspikes/probe_info/positions_MEA256
herdingspikes/probe_info/positions_SiNAPS_S1
herdingspikes/probe_info/positions_biocam
herdingspikes/probe_info/positions_hierlemann_visapy_emulation
herdingspikes/probe_info/positions_mcs120
herdingspikes/probe_info/positions_mea1k
herdingspikes/probe_info/positions_neuropixel
herdingspikes/probe_info/positions_neuroseeker_128
notebooks/localised_spikes_clustered-biocam.ipynb
notebooks/localised_spikes_clustered-mea1k.ipynb
notebooks/localised_spikes_clustered-neuropixel.ipynb
notebooks/localised_spikes_hierlemann_visapy.ipynb
notebooks/parameter_optimisation.ipynb
scripts/detect_sort_biocam.py
spikeseer/Readme.md
spikeseer/icon.gif
spikeseer/loadingroutine.py
spikeseer/main.py
spikeseer/pictures/dialog1.png
spikeseer/pictures/seer.gif
spikeseer/pictures/still.png
tests/test_not_broken.py