Metadata-Version: 2.1
Name: herbs
Version: 0.0.3
Summary: A Python-based GUI for Histological E-data Registration in Brain Space
Home-page: https://github.com/JingyiGF/HERBS
Author: Jingyi GF
Author-email: jingyi.g.fuglstad@gmail.com
Project-URL: Bug Tracker, https://github.com/JingyiGF/HERBS/issues
Keywords: brain atlas,histological image registration,probe coordinates
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Education
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Topic :: Software Development
Classifier: Topic :: Scientific/Engineering
Classifier: Typing :: Typed
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX
Classifier: Operating System :: Unix
Classifier: Operating System :: MacOS
Requires-Python: >=3.8
Description-Content-Type: text/markdown
License-File: LICENSE.txt
Requires-Dist: PyQt5 (==5.14.2)
Requires-Dist: pyqtgraph (==0.12.3)
Requires-Dist: PyOpenGL (==3.1.5)
Requires-Dist: QtRangeSlider (==0.1.5)
Requires-Dist: opencv-python (>=4.5.4.60)
Requires-Dist: numba (>=0.54.1)
Requires-Dist: numpy (>=1.20.3)
Requires-Dist: scipy (>=1.7.3)
Requires-Dist: shutil
Requires-Dist: requests (>=2.26.0)
Requires-Dist: nibabel (>=3.2.1)
Requires-Dist: pynrrd
Requires-Dist: tifffile (>=2021.11.2)
Requires-Dist: aicspylibczi (>=3.0.3)
Requires-Dist: pandas (>=1.3.5)
Requires-Dist: natsort (>=8.0.2)
Requires-Dist: imagecodecs
Requires-Dist: random
Requires-Dist: h5py
Requires-Dist: tables

# HERBS
A Python-based GUI for Histological E-data Registration in Brain Space


## Install

```python
$ pip install herbs
```

## Usage

```python
import herbs
run_herbs()
```

<img src="https://github.com/JingyiGF/HERBS/blob/main/image/herbs.jpg" width="800px"></img>

### 
Please report your issues: https://github.com/JingyiGF/HERBS/issues. Please have a good description (maybe a screenshot or an error message). Any feedback welcome!

Please feel free to start any discussion: https://github.com/JingyiGF/HERBS/discussions.

## Finally
HERBS is 'always' in development, please check updates every time before you use it.


Hope this tool makes your amazing research life more tasty,
Mvh, Jingyi GF
