Metadata-Version: 1.2
Name: hemekg
Version: 0.0.1
Summary: Mechanistic knowledge about heme and hemolytic disorders in Biological Expression Language with PyBEL
Home-page: https://github.com/hemekg/hemekg
Author: Farah Humayun and Daniel Domingo-Fernández
Author-email: daniel.domingo.fernandez@scai.fraunhofer.de
Maintainer: Charles Tapley Hoyt
Maintainer-email: cthoyt@gmail.com
License: UNKNOWN
Download-URL: https://github.com/hemekg/hemekg/releases
Project-URL: Bug Tracker, https://github.com/hemekg/hemekg/issues
Project-URL: Source Code, https://github.com/hemekg/hemekg
Description: HemeKG
        ======
        Assembling and modeling the knowledge around heme pathogenicity and pathway dysregulation in the context of hemolytic
        disorders. The data hosted in this repo was curated by `Farah Humayun <https://github.com/Fahumayun>`_ in context of her
        Master's Thesis. The curated documents are located in the ``hemekg`` directory.
        
        Citation
        --------
        If you find HemeKG useful in your work, please consider citing:
        
        .. [1] Humayun, F., *et al.* (2020). `A computational approach for mapping heme biology in the context of hemolytic
               disorders <https://doi.org/10.3389/fbioe.2020.00074>`_. *Front. Bioeng. Biotechnol.* 8:74.
        
        Installation
        ------------
        To install the ``hemekg`` python package for programmatic access to
        the BEL files in this repository, use the following code in your shell:
        
        .. code-block:: sh
        
            $ git clone https://github.com/hemekg/hemekg.git
            $ cd hemekg
            $ pip install -e .
        
        Commands
        --------
        To see all the commands, simply run:
        
        .. code-block:: sh
        
            $ hemekg
        
        Usage
        -----
        To get the BEL graph, use the following code:
        
        .. code-block:: python
        
            >>> import hemekg
            >>> graph = hemekg.get_graph()
            >>> graph.summarize()
        
        Annotations
        ~~~~~~~~~~~
        Auxiliary annotations are located in the hemekg/annotations directory.
        These include:
        
        1. TimePoint.
        2. Species.
        3. Concentration.
        
Platform: UNKNOWN
Requires-Python: >=3.6
