CITATION.cff
CLAUDE.md
CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE
MANIFEST.in
Makefile
README.md
build_standalone.py
hbat.icns
hbat.ico
hbat.png
hbat.svg
hbat_cli.py
hbat_gui.py
pyproject.toml
pytest.ini
requirements-dev.txt
requirements.txt
.github/workflows/release.yml
.github/workflows/test.yml
docs/Makefile
docs/requirements.txt
docs/source/cli.rst
docs/source/conf.py
docs/source/development.rst
docs/source/index.rst
docs/source/installation.rst
docs/source/license.rst
docs/source/logic.rst
docs/source/parameters.rst
docs/source/quickstart.rst
docs/source/_static/custom.css
docs/source/_static/light-theme.css
docs/source/api/constants.rst
docs/source/api/index.rst
docs/source/api/cli/index.rst
docs/source/api/core/index.rst
docs/source/api/examples/index.rst
docs/source/api/gui/index.rst
example_pdb_files/2izf.pdb
example_pdb_files/6rsa.pdb
example_presets/drug_design_strict.hbat
example_presets/high_resolution.hbat
example_presets/low_resolution.hbat
example_presets/membrane_proteins.hbat
example_presets/nmr_structures.hbat
example_presets/standard_resolution.hbat
example_presets/strong_interactions_only.hbat
example_presets/weak_interactions_permissive.hbat
hbat/__init__.py
hbat/_version.py
hbat/constants.py
hbat/cli/__init__.py
hbat/cli/main.py
hbat/core/__init__.py
hbat/core/analysis.py
hbat/core/pdb_parser.py
hbat/core/vector.py
hbat/gui/__init__.py
hbat/gui/chain_visualization.py
hbat/gui/main_window.py
hbat/gui/parameter_panel.py
hbat/gui/results_panel.py
tests/README.md
tests/__init__.py
tests/conftest.py
tests/run_tests.py
tests/cli/__init__.py
tests/cli/test_cli_main.py
tests/core/__init__.py
tests/core/test_analysis.py
tests/core/test_pdb_parser.py
tests/core/test_vector.py
tests/gui/__init__.py
tests/gui/test_gui_components.py