MANIFEST.in
README.md
pyproject.toml
requirements.txt
setup.py
haystac/__init__.py
haystac/cli.py
haystac.egg-info/PKG-INFO
haystac.egg-info/SOURCES.txt
haystac.egg-info/dependency_links.txt
haystac.egg-info/entry_points.txt
haystac.egg-info/requires.txt
haystac.egg-info/top_level.txt
haystac/config/config.yaml
haystac/workflow/workflow.smk
haystac/workflow/envs/adapterremoval.yaml
haystac/workflow/envs/bowtie2.yaml
haystac/workflow/envs/dedup.yaml
haystac/workflow/envs/extract_fastq.yaml
haystac/workflow/envs/mapdamage.yaml
haystac/workflow/envs/samtools.yaml
haystac/workflow/envs/seqtk.yaml
haystac/workflow/envs/sra_tools.yaml
haystac/workflow/envs/wget.yaml
haystac/workflow/rules/accession_align.smk
haystac/workflow/rules/accession_index.smk
haystac/workflow/rules/adapterremoval.smk
haystac/workflow/rules/database_align.smk
haystac/workflow/rules/database_index.smk
haystac/workflow/rules/entrez.smk
haystac/workflow/rules/entrez_custom_db.smk
haystac/workflow/rules/mapdamage.smk
haystac/workflow/rules/metagenomics.smk
haystac/workflow/rules/refseq.smk
haystac/workflow/rules/sample.smk
haystac/workflow/rules/split_reads.smk
haystac/workflow/rules/sra.smk
haystac/workflow/scripts/.DS_Store
haystac/workflow/scripts/calculate_bt2_idx_chunks.py
haystac/workflow/scripts/calculate_dirichlet_abundances.py
haystac/workflow/scripts/calculate_likelihoods.py
haystac/workflow/scripts/calculate_taxa_probabilities.py
haystac/workflow/scripts/concat_files.py
haystac/workflow/scripts/count_accession_ts_tv.py
haystac/workflow/scripts/coverage_chi2_contingency_test.py
haystac/workflow/scripts/entrez_db_list.py
haystac/workflow/scripts/entrez_download_sequence.py
haystac/workflow/scripts/entrez_invalid_assemblies.py
haystac/workflow/scripts/entrez_nuccore_query.py
haystac/workflow/scripts/entrez_pick_sequences.py
haystac/workflow/scripts/entrez_refseq_create_files.py
haystac/workflow/scripts/entrez_taxonomy_query.py
haystac/workflow/scripts/entrez_utils.py
haystac/workflow/scripts/get_dirichlet_reads.py
haystac/workflow/scripts/get_matter_reads.py
haystac/workflow/scripts/random_db_paths.py
haystac/workflow/scripts/utilities.py
haystac/workflow/scripts/__pycache__/entrez_utils.cpython-36.pyc
haystac/workflow/scripts/__pycache__/utilities.cpython-36.pyc