from harpy.utils.pylogger import get_pylogger

from ._combine import combine
from ._contrast import enhance_contrast
from ._filters import gaussian_filtering, min_max_filtering
from ._image import add_image_layer, add_labels_layer
from ._map import map_image
from ._normalize import normalize
from ._rasterize import rasterize
from ._tiling import tiling_correction
from ._transcripts import transcript_density
from .pixel_clustering._clustering import flowsom
from .pixel_clustering._preprocess import pixel_clustering_preprocess
from .segmentation._align_masks import align_labels_layers
from .segmentation._expand_masks import expand_labels_layer
from .segmentation._filter_masks import filter_labels_layer
from .segmentation._grid import add_grid_labels_layer
from .segmentation._map import map_labels
from .segmentation._merge_masks import (
    mask_to_original,
    merge_labels_layers,
    merge_labels_layers_nuclei,
)
from .segmentation._segmentation import segment, segment_points
from .segmentation.segmentation_models._cellpose import cellpose_callable
