from .ldscore import ld_score
from .ld_score_regression import ld_score_regression
from .expressions import *
from .filtering_allele_frequency import filtering_allele_frequency
from .haplotype_freq_em import haplotype_freq_em
from .plots import hail_metadata, plot_roc_curve
from .phase_by_transmission import *
from .datasets import load_dataset
from .import_gtf import import_gtf, get_gene_intervals
from .write_multiple import write_matrix_tables, block_matrices_tofiles, export_block_matrices
from .export_entries_by_col import export_entries_by_col
from .vcf_combiner import sparse_split_multi, run_combiner, lgt_to_gt, densify
from .function import define_function
from .ldscsim import simulate_phenotypes
from .full_outer_join_mt import full_outer_join_mt
from .tidyr import gather, separate, spread
from .codec import encode, decode
from .db import DB
from .compile import compile_comparison_binary, compiled_compare
from .loop import loop
from .time import strftime, strptime
from .pca import pc_project

__all__ = ['ld_score',
           'ld_score_regression',
           'write_expression',
           'read_expression',
           'filtering_allele_frequency',
           'hail_metadata',
           'phase_trio_matrix_by_transmission',
           'phase_by_transmission',
           'explode_trio_matrix',
           'plot_roc_curve',
           'load_dataset',
           'import_gtf',
           'get_gene_intervals',
           'haplotype_freq_em',
           'write_matrix_tables',
           'block_matrices_tofiles',
           'export_block_matrices',
           'export_entries_by_col',
           'define_function',
           'simulate_phenotypes',
           'full_outer_join_mt',
           'gather',
           'separate',
           'spread',
           'encode',
           'DB',
           'decode',
           'compile_comparison_binary',
           'compiled_compare',
           'lgt_to_gt',
           'run_combiner',
           'sparse_split_multi',
           'densify',
           'loop',
           'strptime',
           'strftime',
           'pc_project']
