from .family_methods import trio_matrix, mendel_errors, transmission_disequilibrium_test, de_novo
from .impex import export_elasticsearch, export_gen, export_bgen, export_plink, export_vcf, \
    import_locus_intervals, import_bed, import_fam, grep, import_bgen, import_gen, import_table, \
    import_plink, read_matrix_table, read_table, get_vcf_metadata, import_vcf, import_gvcfs, \
    import_vcfs, index_bgen, import_matrix_table
from .statgen import skat, identity_by_descent, impute_sex, \
    genetic_relatedness_matrix, realized_relationship_matrix, pca, \
    hwe_normalized_pca, pc_relate, split_multi, filter_alleles, filter_alleles_hts, \
    split_multi_hts, balding_nichols_model, ld_prune, row_correlation, ld_matrix, \
    linear_mixed_model, linear_regression_rows, logistic_regression_rows, poisson_regression_rows, \
    linear_mixed_regression_rows, lambda_gc
from .qc import sample_qc, variant_qc, vep, concordance, nirvana, summarize_variants
from .misc import rename_duplicates, maximal_independent_set, filter_intervals

__all__ = ['trio_matrix',
           'linear_mixed_model',
           'skat',
           'identity_by_descent',
           'impute_sex',
           'linear_regression_rows',
           'logistic_regression_rows',
           'poisson_regression_rows',
           'linear_mixed_regression_rows',
           'lambda_gc',
           'sample_qc',
           'variant_qc',
           'genetic_relatedness_matrix',
           'realized_relationship_matrix',
           'pca',
           'hwe_normalized_pca',
           'pc_relate',
           'rename_duplicates',
           'split_multi',
           'split_multi_hts',
           'mendel_errors',
           'export_elasticsearch',
           'export_gen',
           'export_bgen',
           'export_plink',
           'export_vcf',
           'vep',
           'concordance',
           'maximal_independent_set',
           'import_locus_intervals',
           'import_bed',
           'import_fam',
           'import_matrix_table',
           'nirvana',
           'transmission_disequilibrium_test',
           'grep',
           'import_bgen',
           'import_gen',
           'import_table',
           'import_plink',
           'read_matrix_table',
           'read_table',
           'get_vcf_metadata',
           'import_vcf',
           'import_vcfs',
           'import_gvcfs',
           'index_bgen',
           'balding_nichols_model',
           'ld_prune',
           'filter_intervals',
           'de_novo',
           'filter_alleles',
           'filter_alleles_hts',
           'summarize_variants',
           'row_correlation',
           'ld_matrix'
           ]
