.gitignore
.readthedocs.yml
LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
setup.py
.github/workflows/build_wheels.yml
.github/workflows/test.yml
H2MM_C/C_H2MM.h
H2MM_C/C_H2MM_txtread.c
H2MM_C/H2MM_C.c
H2MM_C/H2MM_C.pyx
H2MM_C/burst_threads.c
H2MM_C/fwd_back.c
H2MM_C/h2mm_functions.c
H2MM_C/model_array.c
H2MM_C/model_limits_funcs.c
H2MM_C/pathloglik.c
H2MM_C/rho_calc.c
H2MM_C/state_path.c
H2MM_C/test_H2MM_C.c
H2MM_C/test_h2mm_array.c
H2MM_C/test_h2mm_array_gamma.c
H2MM_C/test_h2mm_basic.c
H2MM_C/test_h2mm_gamma.c
H2MM_C/test_model_array.c
H2MM_C/test_model_array_gamma.c
H2MM_C/test_viterbi.c
H2MM_C/utils.c
H2MM_C/viterbi.c
H2MM_C.egg-info/PKG-INFO
H2MM_C.egg-info/SOURCES.txt
H2MM_C.egg-info/dependency_links.txt
H2MM_C.egg-info/requires.txt
H2MM_C.egg-info/top_level.txt
docs/Makefile
docs/make.bat
docs/source/AboutH2MM.rst
docs/source/ChangeNotes.rst
docs/source/CustomPrint.rst
docs/source/Documentation.rst
docs/source/FBoundingTutorial.rst
docs/source/FFTutorial.rst
docs/source/FOptimizationTutorial.rst
docs/source/HowTo.rst
docs/source/OBoundingTutorial.rst
docs/source/OOTutorial.rst
docs/source/OOptimizationTutorial.rst
docs/source/SecondaryControl.rst
docs/source/SimTutorial.rst
docs/source/Tutorial.rst
docs/source/conf.py
docs/source/index.rst
docs/source/requirements.txt
docs/source/notebooks/H2MM_Bounds_Tutorial-OOP.ipynb
docs/source/notebooks/H2MM_Bounds_Tutorial.ipynb
docs/source/notebooks/H2MM_Control_Optimization.ipynb
docs/source/notebooks/H2MM_DisplayProgress.ipynb
docs/source/notebooks/H2MM_Optimization_Tutorial-OOP.ipynb
docs/source/notebooks/H2MM_Optimization_Tutorial.ipynb
docs/source/notebooks/H2MM_Simulation_Tutorial.ipynb
docs/source/notebooks/sample_data_2det.txt
docs/source/notebooks/sample_data_3det.txt
docs/source/notebooks/H2MM_Optimization_Tutorial_files/FOT_bic1.png
docs/source/notebooks/H2MM_Optimization_Tutorial_files/FOT_error.png
docs/source/notebooks/H2MM_Optimization_Tutorial_files/FOT_icl1.png
docs/source/notebooks/H2MM_Optimization_Tutorial_files/FOT_iclbic.png
docs/source/notebooks/H2MM_Optimization_Tutorial_files/H2MM_Optimization_Tutorial_26_1.png
docs/source/notebooks/H2MM_Optimization_Tutorial_files/H2MM_Optimization_Tutorial_27_1.png
docs/source/notebooks/H2MM_Optimization_Tutorial_files/H2MM_Optimization_Tutorial_30_1.png
docs/source/notebooks/H2MM_Optimization_Tutorial_files/H2MM_Optimization_Tutorial_42_1.png
tests/memtest_valgrind.py
tests/test_H2MM.py