Metadata-Version: 2.1
Name: gtracks
Version: 1.0.9
Summary: Plot genome track data
Home-page: https://github.com/anthony-aylward/gtracks.git
Author: Anthony Aylward
Author-email: aaylward@eng.ucsd.edu
License: UNKNOWN
Description: # gtracks
        
        plot genome track data (for example from bigWig files)
        
        ## Installation
        
        ```sh
        pip3 install gtracks
        ```
        or
        ```sh
        pip3 install --user gtracks
        ```
        
        ## Usage
        
        ```
        usage: gtracks [-h] [--genes <genes.bed.gz>]
                       [--color-palette <#color> [<#color> ...]] [--max <float>]
                       [--tmp-dir <temp/file/dir>] [--width <int>]
                       [--genes-height <int>] [--gene-rows <int>]
                       <{chr:start-end,GENE}> [<track.bw> [<track.bw> ...]]
                       <path/to/output.{pdf,png,svg}
        
        Plot bigWig signal tracks and gene annotations in a genomic region
        
        positional arguments:
          <{chr:start-end,GENE}>
                                coordinates or gene name to plot
          <track.bw>            bigWig files containing tracks
          <path/to/output.{pdf,png,svg}>
                                path to output file
        
        optional arguments:
          -h, --help            show this help message and exit
          --genes <genes.bed.gz>
                                compressed 6-column BED file or 12-column BED12 file
                                containing gene annotations
          --color-palette <#color> [<#color> ...]
                                color pallete for tracks
          --max <float>         max value of y-axis
          --tmp-dir <temp/file/dir>
                                directory for temporary files
          --width <int>         width of plot in cm
          --genes-height <int>  height of genes track
          --gene-rows <int>     number of gene rows
        ```
        
        ## Examples
        
        ```sh
        gtracks chr21:33031597-33041570 track1.bw track2.bw output.pdf
        gtracks SOD1 track1.bw track2.bw output.png
        
        export GTRACKS_TRACKS=track1.bw,track2.bw
        gtracks SOD1 output.svg
        ```
        
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
