.gitattributes
.gitignore
.readthedocs.yaml
CITATION.bib
Legal.txt
README.rst
environment.yml
fetch_model.sh
license.txt
pyproject.toml
requirements-dev.txt
requirements-doc.txt
requirements.txt
.github/CODE_OF_CONDUCT.md
.github/pull_request_template.md
.github/workflows/codespell.yml
.github/workflows/deploy_release.yml
.github/workflows/ruff.yml
.github/workflows/run_coverage.yml
.github/workflows/run_tests.yml
data/GCA_000006155.2.fna
data/small.fna
data/small.raw.csv
data/small.seqs.raw.csv
data/small.seqs.tax.0.05.csv
data/small.tax.0.05.csv
docs/CONTRIBUTING.rst
docs/Makefile
docs/source/accuracy.png
docs/source/api_docs.rst
docs/source/conf.py
docs/source/gtnet-favicon.png
docs/source/gtnet.png
docs/source/index.rst
docs/source/installation.rst
docs/source/legal.rst
docs/source/performance.rst
docs/source/runtime.png
docs/source/training.rst
docs/source/usage.rst
paper/paper.bib
paper/paper.md
src/gtnet/__init__.py
src/gtnet/classify.py
src/gtnet/filter.py
src/gtnet/main.py
src/gtnet/predict.py
src/gtnet/sequence.py
src/gtnet/utils.py
src/gtnet.egg-info/PKG-INFO
src/gtnet.egg-info/SOURCES.txt
src/gtnet.egg-info/dependency_links.txt
src/gtnet.egg-info/entry_points.txt
src/gtnet.egg-info/requires.txt
src/gtnet.egg-info/top_level.txt
src/gtnet/data/GCA_000006155.2.fna
src/gtnet/deploy_pkg/last.pt
src/gtnet/deploy_pkg/manifest.json
src/gtnet/deploy_pkg/bins/class.roc.npz
src/gtnet/deploy_pkg/bins/class.score.pt
src/gtnet/deploy_pkg/bins/domain.roc.npz
src/gtnet/deploy_pkg/bins/domain.score.pt
src/gtnet/deploy_pkg/bins/family.roc.npz
src/gtnet/deploy_pkg/bins/family.score.pt
src/gtnet/deploy_pkg/bins/genus.roc.npz
src/gtnet/deploy_pkg/bins/genus.score.pt
src/gtnet/deploy_pkg/bins/order.roc.npz
src/gtnet/deploy_pkg/bins/order.score.pt
src/gtnet/deploy_pkg/bins/phylum.roc.npz
src/gtnet/deploy_pkg/bins/phylum.score.pt
src/gtnet/deploy_pkg/bins/species.roc.npz
src/gtnet/deploy_pkg/bins/species.score.pt
src/gtnet/deploy_pkg/contigs/class.roc.npz
src/gtnet/deploy_pkg/contigs/class.score.pt
src/gtnet/deploy_pkg/contigs/domain.roc.npz
src/gtnet/deploy_pkg/contigs/domain.score.pt
src/gtnet/deploy_pkg/contigs/family.roc.npz
src/gtnet/deploy_pkg/contigs/family.score.pt
src/gtnet/deploy_pkg/contigs/genus.roc.npz
src/gtnet/deploy_pkg/contigs/genus.score.pt
src/gtnet/deploy_pkg/contigs/order.roc.npz
src/gtnet/deploy_pkg/contigs/order.score.pt
src/gtnet/deploy_pkg/contigs/phylum.roc.npz
src/gtnet/deploy_pkg/contigs/phylum.score.pt
src/gtnet/deploy_pkg/contigs/species.roc.npz
src/gtnet/deploy_pkg/contigs/species.score.pt
tests/test_lca.py
tests/test_predict.py
tests/test_sequence.py