MANIFEST.in
README.md
setup.py
bin/gtdbtk
gtdbtk/VERSION
gtdbtk/__init__.py
gtdbtk/classify.py
gtdbtk/exceptions.py
gtdbtk/main.py
gtdbtk/markers.py
gtdbtk/misc.py
gtdbtk/relative_distance.py
gtdbtk/reroot_tree.py
gtdbtk/tools.py
gtdbtk/trim_msa.py
gtdbtk.egg-info/PKG-INFO
gtdbtk.egg-info/SOURCES.txt
gtdbtk.egg-info/dependency_links.txt
gtdbtk.egg-info/requires.txt
gtdbtk.egg-info/top_level.txt
gtdbtk/biolib_lite/__init__.py
gtdbtk/biolib_lite/common.py
gtdbtk/biolib_lite/custom_help_formatter.py
gtdbtk/biolib_lite/exceptions.py
gtdbtk/biolib_lite/execute.py
gtdbtk/biolib_lite/logger.py
gtdbtk/biolib_lite/newick.py
gtdbtk/biolib_lite/parallel.py
gtdbtk/biolib_lite/prodigal_biolib.py
gtdbtk/biolib_lite/seq_io.py
gtdbtk/biolib_lite/taxonomy.py
gtdbtk/config/__init__.py
gtdbtk/config/config.py
gtdbtk/config/config_template.py
gtdbtk/config/output.py
gtdbtk/external/__init__.py
gtdbtk/external/hmm_aligner.py
gtdbtk/external/pfam_search.py
gtdbtk/external/pplacer.py
gtdbtk/external/prodigal.py
gtdbtk/external/tigrfam_search.py
gtdbtk/external/pypfam/__init__.py
gtdbtk/external/pypfam/HMM/HMMMatch.py
gtdbtk/external/pypfam/HMM/HMMResults.py
gtdbtk/external/pypfam/HMM/HMMResultsIO.py
gtdbtk/external/pypfam/HMM/HMMSequence.py
gtdbtk/external/pypfam/HMM/HMMUnit.py
gtdbtk/external/pypfam/HMM/__init__.py
gtdbtk/external/pypfam/Scan/PfamScan.py
gtdbtk/external/pypfam/Scan/__init__.py
gtdbtk/tests/data/genomes/genome_1.fna
gtdbtk/tests/data/genomes/genome_2.fna
gtdbtk/tests/data/genomes/genome_3.fna