0.2.1
- remove Perl dependencies
- remove Biolib,mpdl3,jinja dependencies
- add support for writing to a scratch file using pplacer (--mmap-file options)
- add random seed to trim MSA step to allow for reproducible results.
- use GTDBTK_DATA_PATH variable to set data directory.
- species classification based on ANI radii.
- new columns ( aa_percent,red_values,fastani_reference_radius,warnings )
- bug fixing
- gtdbtk test options
0.1.6
- align step in classify_wf and de_novo_wf function has been fixed.
- improve summary file output.
- "align" function now supports the same custom trimming GTDB will be performing.
- returns closest reference genome to summary file (even if the ANI is less than 95%)
0.1.5
- bug fixing 
0.1.4
- "align" function now supports the same custom trimming GTDB will be performing.
- returns closest reference genome to summary file (even if the ANI is less than 95%)
0.1.3
- v0.1.3 resolves bug that would occur when a user genome has a FastANI >= 95% with reference genomes but not with the closest pplacer leaf node. 
0.1.2
- resolve bug that would occasionally cause genomes to not be correctly associated with a reference genome in the pplacer tree. FastANI was still identifying correct species assignments.
0.1.1
- config_template.py updated
- rooting of the tree is now fixed.
0.1.0
- GTDB-Tk is now using archived (.gz) fna files
- summary.tsv file is now the main output file.
- fastani.tsv file is now combined with summary.tsv.
- red_value.tsv file has been removed.
- Each Pplacer placement on a species branch is now verify by FastANI and the ANI is compared with all other species in the same genus to check Pplacer accuracy.
- New functionality: "trim_msa" allows to trim an untrimmed MSA (41155AA for bac120 and 32675AA for ar122) based on GTDB-Tk masks
0.0.8b4
- bug fixing 
0.0.8b3
- bug fixing 
0.0.8b2
- bug fixing 
0.0.8b1
- Using .fna.gz reference genome for FastANI
- Pplacer placement are verified by FastANI  
0.0.7
0.0.6
- Migration to R83 and integration of UBA genomes
- add "debug" flag to classify options
- error handling improvement
0.0.5
- stable version for pip 
0.0.4b3
- fastANI dependency fix
0.0.4b2
- fastANI dependency fix
0.0.4b1
- FastAni comparison bug fixing 
0.0.4-beta
- Code cleaning
0.0.3
- FastAni multithreaded.
0.0.2
- modified align command to automatically determine domain of each genome and process accordingly
0.0.1
- initial release
