MANIFEST.in
README.md
setup.py
bin/gtdbtk
gtdbtk/VERSION
gtdbtk/__init__.py
gtdbtk/classify.py
gtdbtk/main.py
gtdbtk/markers.py
gtdbtk/misc.py
gtdbtk/relative_distance.py
gtdbtk/reroot_tree.py
gtdbtk/tools.py
gtdbtk.egg-info/PKG-INFO
gtdbtk.egg-info/SOURCES.txt
gtdbtk.egg-info/dependency_links.txt
gtdbtk.egg-info/requires.txt
gtdbtk.egg-info/top_level.txt
gtdbtk/config/__init__.py
gtdbtk/config/config_metadata.py
gtdbtk/config/config_template.py
gtdbtk/config/default_values.py
gtdbtk/external/__init__.py
gtdbtk/external/hmm_aligner.py
gtdbtk/external/pfam_search.pl
gtdbtk/external/pfam_search.py
gtdbtk/external/prodigal.py
gtdbtk/external/tigrfam_search.py
gtdbtk/external/Bio/Pfam/Active_site/as_search.pm
gtdbtk/external/Bio/Pfam/HMM/HMM.pm
gtdbtk/external/Bio/Pfam/HMM/HMMIO.pm
gtdbtk/external/Bio/Pfam/HMM/HMMMatch.pm
gtdbtk/external/Bio/Pfam/HMM/HMMResults.pm
gtdbtk/external/Bio/Pfam/HMM/HMMResultsIO.pm
gtdbtk/external/Bio/Pfam/HMM/HMMSequence.pm
gtdbtk/external/Bio/Pfam/HMM/HMMUnit.pm
gtdbtk/external/Bio/Pfam/Scan/PfamScan.pm
gtdbtk/external/Bio/Pfam/Scan/Seq.pm