Metadata-Version: 2.1
Name: gsMap
Version: 1.65
Summary: Genetics-informed pathogenic spatial mapping
Author-email: liyang <songliyang@westlake.edu.cn>, wenhao <chenwenhao@westlake.edu.cn>
Requires-Python: >=3.8
Description-Content-Type: text/markdown
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Operating System :: POSIX :: Linux
Requires-Dist: numpy
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Project-URL: Documentation, https://yanglab.westlake.edu.cn/gsmap/document
Project-URL: Home, https://github.com/LeonSong1995/gsMap
Project-URL: Website, https://yanglab.westlake.edu.cn/gsmap/home
Provides-Extra: doc

# gsMap (genetically informed spatial mapping of cells for complex traits)
[![stars-badge](https://img.shields.io/github/stars/LeonSong1995/gsMap?logo=GitHub&color=yellow)](https://github.com/LeonSong1995/gsMap/stargazers)
[![pypi-badge](https://img.shields.io/pypi/v/gsMap)](https://pypi.org/p/gsMap)
[![license-badge](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)

![Model architecture](schematic.png)

## 1.Citation
Liyang Song, Wenhao Chen, Junren Hou, Minmin Guo, Jian Yang (2024) Spatially resolved mapping of cells associated with human complex traits. (Under review)

## 2.Installation

install use pip:

```bash
pip install gsMap
```

install from source:

```bash
git clone https://github.com/LeonSong1995/gsMap.git
cd gsMap
pip install -e .
```

## 3.Usage

Please checkout the documentations and tutorials at
[gsMap.docs](https://yanglab.westlake.edu.cn/gsmap/document).


## 4.Online visualization

To visualize the traits-embryo or traits-brain association spatial maps, please refer to [gsmap.visualization](https://yanglab.westlake.edu.cn/gsmap/visualize).

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