from .clustering import (
    calculate_interfacialness_score,
    get_n_nearest_neighbors,
    leiden_mito_sweep,
    markov_clustering,
    to_knn_graph,
)
from .enrichment import calculate_cluster_enrichment, rank_proteins_groups
from .integration import align_adatas, aligned_umap, mr_score, remodeling_score
from .localization import (
    knn_annotation,
    knn_annotation_old,
    svm_annotation,
    svm_train,
)
from .scoring import (
    calinski_habarasz_score,
    class_balance,
    knn_f1_score,
    qsep_score,
    silhouette_score,
)
from .tagm import tagm_map_predict, tagm_map_train
