from .annotation import add_external_validation_markers, add_markers, annotate_uniprot_cc
from .contaminants import remove_contaminants, remove_cRAP_proteins
from .enrichment import calculate_enrichment_vs_all, calculate_enrichment_vs_untagged
from .imputation import impute_gaussian, impute_knn
from .simple import (
    aggregate_proteins,
    aggregate_samples,
    calculate_qc_metrics,
    calculate_replicate_cv,
    drop_excess_MQ_metadata,
    filter_min_consecutive_fractions,
    filter_proteins,
    filter_proteins_per_replicate,
    filter_samples,
    highly_variable_proteins,
    neighbors,
    normalize_total,
)
