anndata
markov_clustering
matplotlib
networkx
numpy
pandas
protdata
pysankeybeta
requests
scanpy[leiden]>=1.10
scikit-learn
scipy
seaborn
umap-learn

[build]
twine
build

[dev]
black~=25.1
flake8~=7.0
isort~=5.0
pre-commit~=4.0
pylint~=3.0
pytest~=8.0

[docs]
sphinx
sphinx-autodoc-typehints
scanpydoc[theme,typehints]>=0.15.1
sphinx-book-theme
myst_parser
myst-nb

[notebook]
jupyter
matplotlib
jupytext
