### COMMIT 4 — 2026-03-27T00:00:00Z
**Branch:** feature-coding-assistant
**Milestone:** Phase 3.5 complete — File system + git tool layer (98 tools total). P0 safety fixes. graq_reason + graq_predict deep analysis of coding domain ontology completeness. 131 targeted tests pass.
**State:** WORKING
**Files Changed:**
- MODIFIED: `graqle/plugins/mcp_dev_server.py` — additive: 10 new tool definitions + 10 kogni_* aliases; 10 handler methods; _WRITE_TOOLS extended
- MODIFIED: `graqle/routing.py` — additive: 20 new MCP_TOOL_TO_TASK entries + 8 new TASK_RECOMMENDATIONS
- CREATED: `tests/test_generation/test_phase35_tools.py` — 31 tests
- MODIFIED: `tests/test_plugins/test_mcp_dev_server.py` — tool counts 78→98
- CREATED: `.gsm/decisions/ADR-115-phase35-file-system-tools.md`
- CREATED: `.gsm/decisions/ADR-116-coding-ontology-completeness.md`
- MODIFIED: `.gsm/index.md`
**Key Decisions:**
- graq_bash blocklist: rm -rf, git push --force, DROP TABLE, DROP DATABASE
- dry_run=True default for graq_write + graq_git_commit
- Patent scan in graq_write + graq_git_commit (TS-1..TS-4)
- WorkflowOrchestrator identified as highest-priority next gap (graq_predict 82%)
- Coding ontology at ~25% complete; roadmap: 16 skills / 13 entities / 12 relationships / 8 output gates
**Next:**
- [ ] Phase 4: CLI commands (graq generate, graq edit)
- [ ] Phase 4: Ontology expansion (CODE_REVIEW, DEPENDENCY_ANALYSIS, CodeDependency, CodeChange)
- [ ] Phase 5: WorkflowOrchestrator (DAG/saga)
**Blockers:** None
